Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36937 * 120.00293 * 2 1 4 4 H 1.07998 * 119.99869 * 202.37078 * 3 2 1 5 5 C 1.38813 * 119.99884 * 22.37359 * 3 2 1 6 6 N 1.31617 * 119.99998 * 11.34731 * 5 3 2 7 7 Si 1.86804 * 119.99948 * 191.35364 * 5 3 2 8 8 H 1.48495 * 109.47230 * 89.99620 * 7 5 3 9 9 H 1.48495 * 109.46933 * 209.99653 * 7 5 3 10 10 H 1.48500 * 109.46952 * 329.99504 * 7 5 3 11 11 C 1.46507 * 119.99920 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46941 * 269.99841 * 11 2 1 13 13 H 1.09004 * 113.03251 * 306.72050 * 12 11 2 14 14 C 1.53931 * 113.75908 * 174.99864 * 12 11 2 15 15 C 1.53937 * 86.33917 * 221.96151 * 14 12 11 16 16 N 1.47957 * 86.17972 * 23.72232 * 15 14 12 17 17 H 1.09001 * 109.46851 * 274.18458 * 1 2 3 18 18 H 1.09004 * 109.47542 * 34.18006 * 1 2 3 19 19 H 1.09003 * 109.47323 * 154.18515 * 1 2 3 20 20 H 0.96998 * 120.00146 * 179.97438 * 6 5 3 21 21 H 1.08993 * 109.47071 * 149.99977 * 11 2 1 22 22 H 1.09001 * 109.47124 * 29.99452 * 11 2 1 23 23 H 1.09003 * 113.73367 * 107.60288 * 14 12 11 24 24 H 1.08999 * 113.83101 * 336.33181 * 14 12 11 25 25 H 1.08999 * 113.75906 * 138.03946 * 15 14 12 26 26 H 1.09003 * 113.75729 * 269.40001 * 15 14 12 27 27 H 1.00902 * 111.00268 * 88.20360 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2210 -0.3560 5 6 1.5340 2.3428 0.4576 6 7 0.3846 2.2688 1.0946 7 14 2.3367 4.0047 0.1691 8 1 1.8673 4.5633 -1.1242 9 1 1.9687 4.9300 1.2707 10 1 3.8123 3.8418 0.1316 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4418 13 1 2.9372 -0.9427 2.0441 14 6 3.1110 -3.0975 1.5581 15 6 2.1335 -3.3554 2.7189 16 7 1.2749 -2.3251 2.0940 17 1 -0.3633 0.0750 1.0249 18 1 -0.3634 0.8502 -0.5773 19 1 -0.3634 -0.9251 -0.4475 20 1 -0.0454 3.0772 1.4147 21 1 3.1498 -1.1383 -0.5143 22 1 1.6083 -2.0282 -0.5147 23 1 4.1565 -3.0623 1.8645 24 1 2.9434 -3.7387 0.6927 25 1 1.6970 -4.3541 2.7119 26 1 2.5250 -3.0680 3.6948 27 1 0.6562 -2.7358 1.4108 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885227876.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = 35.874310 kcal Electronic energy + Delta-G solvation = -10117.036075 eV Core-core repulsion = 8296.891633 eV Total energy + Delta-G solvation = -1820.144442 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.37349 -37.04193 -33.23745 -29.45003 -27.94604 -27.70471 -24.98508 -22.48230 -21.05705 -18.71748 -17.04453 -16.45358 -15.96930 -15.59660 -14.93940 -14.52600 -14.12522 -13.47549 -13.10701 -13.04086 -12.73333 -12.45820 -12.24827 -12.06318 -11.89449 -11.64596 -11.46113 -10.61218 -9.18483 -8.73423 -7.78972 -5.26957 1.46575 1.47956 1.56822 2.52466 3.21806 3.35715 3.60782 3.98145 4.02135 4.43560 4.55560 4.74936 4.81019 4.87112 4.89990 4.98029 5.07515 5.35952 5.46954 5.51485 5.65823 5.81832 6.35821 6.59830 7.18477 7.91319 8.34804 9.24416 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.072660 B = 0.013256 C = 0.012699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.263134 B = 2111.823630 C = 2204.298275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.614 5.614 3 C -0.264 4.264 4 H 0.072 0.928 5 C -0.057 4.057 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.285 1.285 9 H -0.297 1.297 10 H -0.268 1.268 11 C 0.149 3.851 12 C 0.030 3.970 13 H 0.062 0.938 14 C -0.167 4.167 15 C 0.018 3.982 16 N -0.677 5.677 17 H 0.003 0.997 18 H 0.012 0.988 19 H 0.025 0.975 20 H 0.245 0.755 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 -9.792 -0.758 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.337 5.337 3 C -0.394 4.394 4 H 0.089 0.911 5 C -0.252 4.252 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.212 1.212 9 H -0.223 1.223 10 H -0.192 1.192 11 C 0.022 3.978 12 C -0.083 4.083 13 H 0.080 0.920 14 C -0.206 4.206 15 C -0.112 4.112 16 N -0.306 5.306 17 H 0.021 0.979 18 H 0.030 0.970 19 H 0.044 0.956 20 H 0.055 0.945 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.820 -9.138 -0.099 9.904 hybrid contribution 0.435 0.604 -0.556 0.929 sum 4.255 -8.534 -0.655 9.558 Atomic orbital electron populations 1.20443 0.82720 0.95280 0.97408 1.44116 1.02142 1.01562 1.85900 1.19576 0.98209 0.86708 1.34917 0.91059 1.25843 0.98555 1.01993 0.98805 1.70278 1.19336 1.27201 1.41632 0.85216 0.78419 0.79754 0.76746 1.21198 1.22349 1.19230 1.21198 0.96106 0.87245 0.93202 1.23764 0.91626 0.95460 0.97459 0.91985 1.24447 1.00724 0.95983 0.99494 1.23540 0.93732 0.96100 0.97819 1.65067 1.14178 1.22546 1.28782 0.97879 0.96960 0.95632 0.94528 0.92612 0.92173 0.90951 0.88426 0.89061 0.89620 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.68 9.01 127.77 1.15 10.84 15 2 N -0.61 -31.82 2.93 -726.93 -2.13 -33.95 15 3 C -0.26 -14.95 9.67 84.03 0.81 -14.14 15 4 H 0.07 3.89 7.84 -2.91 -0.02 3.86 15 5 C -0.06 -3.32 5.13 84.86 0.44 -2.89 15 6 N -0.94 -57.96 10.59 21.65 0.23 -57.73 15 7 Si 0.97 46.44 29.57 68.60 2.03 48.47 15 8 H -0.29 -13.37 7.11 99.48 0.71 -12.66 15 9 H -0.30 -14.34 7.11 99.48 0.71 -13.64 15 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 11 C 0.15 6.03 5.58 86.38 0.48 6.51 15 12 C 0.03 1.13 4.57 45.02 0.21 1.33 15 13 H 0.06 2.83 8.14 -2.38 -0.02 2.82 15 14 C -0.17 -4.47 7.83 31.24 0.24 -4.22 15 15 C 0.02 0.48 8.90 86.41 0.77 1.25 15 16 N -0.68 -24.55 8.49 -502.91 -4.27 -28.82 15 17 H 0.00 0.17 7.42 -2.39 -0.02 0.15 15 18 H 0.01 0.66 7.19 -2.38 -0.02 0.65 15 19 H 0.03 1.11 7.84 -2.39 -0.02 1.10 15 20 H 0.25 14.77 8.31 -92.71 -0.77 13.99 15 21 H 0.06 2.17 8.03 -2.39 -0.02 2.15 15 22 H 0.06 2.13 7.66 -2.39 -0.02 2.11 15 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.10 2.21 8.10 -2.39 -0.02 2.19 15 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 27 H 0.33 11.17 8.44 -89.69 -0.76 10.42 15 Total: -1.00 -65.95 226.98 0.35 -65.61 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.38 Total: 7.74 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 4.10 Total: -1.32 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -6.16 Total: -120.50 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -65.95 0.35 -65.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885227876.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.479 kcal (2) G-P(sol) polarization free energy of solvation -65.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds