Wall clock time and date at job start Mon Mar 30 2020 02:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.72882 * 2 1 4 4 C 1.55094 * 110.69098 * 123.02339 * 2 1 3 5 5 C 1.54596 * 102.85199 * 155.77898 * 4 2 1 6 6 O 1.42901 * 110.30825 * 97.11163 * 5 4 2 7 7 C 1.50701 * 110.31068 * 219.18936 * 5 4 2 8 8 H 1.08002 * 119.99761 * 358.60234 * 7 5 4 9 9 C 1.37871 * 119.99694 * 178.88797 * 7 5 4 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 5 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 5 12 12 H 1.48504 * 109.47266 * 60.00049 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47383 * 299.99456 * 11 9 7 15 15 C 1.53999 * 105.22223 * 338.15253 * 5 4 2 16 16 N 1.47898 * 107.05863 * 358.72169 * 15 5 4 17 17 H 1.09001 * 109.47329 * 181.64335 * 1 2 3 18 18 H 1.08998 * 109.46864 * 301.63882 * 1 2 3 19 19 H 1.08997 * 109.47358 * 61.63835 * 1 2 3 20 20 H 1.09002 * 110.71171 * 37.46509 * 4 2 1 21 21 H 1.09004 * 110.81163 * 274.13456 * 4 2 1 22 22 H 0.96695 * 113.99750 * 181.38783 * 6 5 4 23 23 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 24 24 H 1.08993 * 109.91570 * 118.08015 * 15 5 4 25 25 H 1.09001 * 109.91351 * 239.17660 * 15 5 4 26 26 H 1.00900 * 111.00429 * 264.82134 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0779 -0.7907 1.2165 5 6 3.4853 -1.2198 0.7420 6 8 4.4729 -0.3118 1.2342 7 6 3.7883 -2.6219 1.2042 8 1 3.0677 -3.1612 1.8011 9 6 4.9877 -3.2138 0.8698 10 7 5.8651 -2.5571 0.1429 11 14 5.3665 -4.9488 1.4492 12 1 4.3438 -5.8836 0.9147 13 1 6.7092 -5.3522 0.9594 14 1 5.3475 -4.9903 2.9335 15 6 3.4278 -1.1647 -0.7959 16 7 2.0542 -0.7588 -1.1644 17 1 -0.3634 -1.0272 0.0295 18 1 -0.3633 0.5391 0.8749 19 1 -0.3634 0.4882 -0.9043 20 1 1.4571 -1.6631 1.4206 21 1 2.1461 -0.1502 2.0959 22 1 5.3738 -0.5190 0.9506 23 1 6.7091 -2.9734 -0.0920 24 1 4.1440 -0.4322 -1.1682 25 1 3.6519 -2.1472 -1.2113 26 1 1.4791 -1.5646 -1.3594 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885228812.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:07 Heat of formation + Delta-G solvation = -60.229804 kcal Electronic energy + Delta-G solvation = -10456.591626 eV Core-core repulsion = 8534.561135 eV Total energy + Delta-G solvation = -1922.030491 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.14113 -34.39412 -32.11866 -30.00515 -28.43001 -25.36442 -23.68124 -20.21375 -19.20059 -16.93153 -15.36129 -14.88055 -14.35841 -13.61872 -13.28412 -12.77896 -12.46385 -11.77260 -11.39884 -11.18680 -11.01507 -10.75646 -10.51205 -10.33772 -10.31066 -9.94892 -9.06636 -8.72385 -8.37518 -7.48472 -6.21424 -4.29684 3.22864 3.28072 3.30728 4.29586 5.03025 5.14177 5.58360 5.69972 5.90089 6.01627 6.20268 6.34674 6.44321 6.52884 6.83279 6.90420 7.03550 7.33410 7.48172 7.70070 7.87580 8.06299 8.33488 8.73521 9.38626 9.55015 10.85294 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069598 B = 0.015624 C = 0.014947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.214212 B = 1791.731772 C = 1872.826198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.079 0.921 4 C -0.136 4.136 5 C 0.226 3.774 6 O -0.591 6.591 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.067 3.933 10 N -0.896 5.896 11 Si 0.900 3.100 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.041 3.959 16 N -0.679 5.679 17 H 0.051 0.949 18 H 0.055 0.945 19 H 0.055 0.945 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.380 0.620 23 H 0.268 0.732 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 1.158 -0.520 5.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.185 3.815 6 O -0.400 6.400 7 C -0.576 4.576 8 H 0.077 0.923 9 C -0.135 4.135 10 N -0.536 5.536 11 Si 0.728 3.272 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C -0.088 4.088 16 N -0.307 5.307 17 H 0.070 0.930 18 H 0.074 0.926 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.231 0.769 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.597 2.000 -0.767 5.993 hybrid contribution 0.708 -2.015 0.723 2.255 sum -4.889 -0.015 -0.044 4.889 Atomic orbital electron populations 1.21836 0.95666 1.01449 1.01260 1.22698 0.93307 0.98570 0.90076 0.90297 1.23069 0.97342 0.99097 0.97963 1.19827 0.84723 0.87677 0.89271 1.86106 1.20756 1.55499 1.77638 1.21710 1.02719 0.99314 1.33820 0.92335 1.25042 0.95985 0.98319 0.94108 1.69645 1.08601 1.38060 1.37326 0.86525 0.77493 0.83982 0.79232 1.20179 1.21066 1.20123 1.23353 0.87898 0.99788 0.97785 1.63001 1.04905 1.25539 1.37206 0.92981 0.92613 0.92637 0.91648 0.92051 0.76914 0.92155 0.92436 0.91238 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.39 37.16 0.35 -1.85 15 2 C 0.06 1.23 3.91 -65.70 -0.26 0.97 15 3 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 4 C -0.14 -3.00 5.79 -24.79 -0.14 -3.15 15 5 C 0.23 5.80 0.99 -90.41 -0.09 5.71 15 6 O -0.59 -16.06 12.92 -35.23 -0.46 -16.52 15 7 C -0.54 -14.71 8.07 -34.44 -0.28 -14.99 15 8 H 0.06 1.59 7.56 -52.49 -0.40 1.20 15 9 C 0.07 1.81 5.02 -17.82 -0.09 1.73 15 10 N -0.90 -24.36 10.78 55.43 0.60 -23.76 15 11 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 15 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 15 C 0.04 1.01 6.19 -2.75 -0.02 0.99 15 16 N -0.68 -14.11 7.33 -103.09 -0.76 -14.86 15 17 H 0.05 0.76 8.13 -51.93 -0.42 0.34 15 18 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.06 1.40 7.60 -51.93 -0.39 1.01 15 21 H 0.06 1.35 8.08 -51.93 -0.42 0.93 15 22 H 0.38 10.43 7.17 45.56 0.33 10.75 15 23 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 24 H 0.06 1.47 7.96 -51.93 -0.41 1.06 15 25 H 0.07 1.80 7.22 -51.93 -0.37 1.43 15 26 H 0.32 6.27 8.62 -39.29 -0.34 5.93 15 LS Contribution 216.32 15.07 3.26 3.26 Total: -1.00 -27.81 216.32 -5.74 -33.55 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -2.84 Total: 13.05 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.53 Total: -10.58 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.16 Total: -38.62 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.46 Total: -16.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -27.81 -5.74 -33.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228812.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.683 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds