Wall clock time and date at job start Mon Mar 30 2020 02:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.72882 * 2 1 4 4 C 1.55094 * 110.69098 * 123.02339 * 2 1 3 5 5 C 1.54596 * 102.85199 * 155.77898 * 4 2 1 6 6 O 1.42901 * 110.30825 * 97.11163 * 5 4 2 7 7 C 1.50701 * 110.31068 * 219.18936 * 5 4 2 8 8 H 1.08002 * 119.99761 * 358.60234 * 7 5 4 9 9 C 1.37871 * 119.99694 * 178.88797 * 7 5 4 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 5 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 5 12 12 H 1.48504 * 109.47266 * 60.00049 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47383 * 299.99456 * 11 9 7 15 15 C 1.53999 * 105.22223 * 338.15253 * 5 4 2 16 16 N 1.47898 * 107.05863 * 358.72169 * 15 5 4 17 17 H 1.09001 * 109.47329 * 181.64335 * 1 2 3 18 18 H 1.08998 * 109.46864 * 301.63882 * 1 2 3 19 19 H 1.08997 * 109.47358 * 61.63835 * 1 2 3 20 20 H 1.09002 * 110.71171 * 37.46509 * 4 2 1 21 21 H 1.09004 * 110.81163 * 274.13456 * 4 2 1 22 22 H 0.96695 * 113.99750 * 181.38783 * 6 5 4 23 23 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 24 24 H 1.08993 * 109.91570 * 118.08015 * 15 5 4 25 25 H 1.09001 * 109.91351 * 239.17660 * 15 5 4 26 26 H 1.00900 * 111.00429 * 264.82134 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0779 -0.7907 1.2165 5 6 3.4853 -1.2198 0.7420 6 8 4.4729 -0.3118 1.2342 7 6 3.7883 -2.6219 1.2042 8 1 3.0677 -3.1612 1.8011 9 6 4.9877 -3.2138 0.8698 10 7 5.8651 -2.5571 0.1429 11 14 5.3665 -4.9488 1.4492 12 1 4.3438 -5.8836 0.9147 13 1 6.7092 -5.3522 0.9594 14 1 5.3475 -4.9903 2.9335 15 6 3.4278 -1.1647 -0.7959 16 7 2.0542 -0.7588 -1.1644 17 1 -0.3634 -1.0272 0.0295 18 1 -0.3633 0.5391 0.8749 19 1 -0.3634 0.4882 -0.9043 20 1 1.4571 -1.6631 1.4206 21 1 2.1461 -0.1502 2.0959 22 1 5.3738 -0.5190 0.9506 23 1 6.7091 -2.9734 -0.0920 24 1 4.1440 -0.4322 -1.1682 25 1 3.6519 -2.1472 -1.2113 26 1 1.4791 -1.5646 -1.3594 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885228812.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:06 Heat of formation + Delta-G solvation = -82.159680 kcal Electronic energy + Delta-G solvation = -10457.542577 eV Core-core repulsion = 8534.561135 eV Total energy + Delta-G solvation = -1922.981442 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.97236 -36.31020 -34.21072 -31.59883 -30.32697 -27.18986 -25.51033 -21.92457 -21.08554 -18.98425 -17.33056 -16.72090 -16.14074 -15.38349 -15.03161 -14.59825 -14.25631 -13.49920 -13.16258 -12.91665 -12.83117 -12.45836 -12.31018 -12.07954 -11.97738 -11.88610 -11.02094 -10.72805 -10.38022 -9.31521 -8.25430 -6.41966 1.39257 1.40328 1.48432 2.35572 2.98877 3.46104 4.00345 4.11018 4.23960 4.43745 4.58124 4.81416 4.87153 4.99791 5.12128 5.22804 5.32814 5.40463 5.51676 5.68281 6.01375 6.08717 6.59109 6.68418 7.29426 7.41064 8.79798 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069598 B = 0.015624 C = 0.014947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.214212 B = 1791.731772 C = 1872.826198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.133 4.133 5 C 0.206 3.794 6 O -0.601 6.601 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.025 3.975 10 N -0.914 5.914 11 Si 0.963 3.037 12 H -0.270 1.270 13 H -0.279 1.279 14 H -0.275 1.275 15 C 0.057 3.943 16 N -0.672 5.672 17 H 0.059 0.941 18 H 0.074 0.926 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.374 0.626 23 H 0.271 0.729 24 H 0.037 0.963 25 H 0.048 0.952 26 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.607 0.718 -0.446 6.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 H 0.089 0.911 4 C -0.172 4.172 5 C 0.165 3.835 6 O -0.409 6.409 7 C -0.601 4.601 8 H 0.072 0.928 9 C -0.175 4.175 10 N -0.553 5.553 11 Si 0.788 3.212 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.201 1.201 15 C -0.074 4.074 16 N -0.300 5.300 17 H 0.078 0.922 18 H 0.093 0.907 19 H 0.090 0.910 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.224 0.776 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.780 1.566 -0.698 6.993 hybrid contribution 1.081 -1.848 0.699 2.252 sum -5.699 -0.282 0.000 5.706 Atomic orbital electron populations 1.21771 0.91816 1.02599 1.03034 1.22746 0.96317 0.97291 0.87870 0.91077 1.23061 0.95452 0.99674 0.98986 1.20183 0.85980 0.87193 0.90139 1.86100 1.20759 1.56098 1.77980 1.21962 1.03288 1.00381 1.34502 0.92786 1.25774 0.95758 1.01939 0.94037 1.69735 1.08745 1.39332 1.37509 0.85544 0.77511 0.79590 0.78568 1.19497 1.20455 1.20071 1.23001 0.89596 0.97890 0.96881 1.62927 1.03448 1.25956 1.37711 0.92159 0.90705 0.91038 0.91007 0.92303 0.77602 0.91971 0.94434 0.93381 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.39 71.98 0.68 -2.94 15 2 C 0.07 2.49 3.91 45.31 0.18 2.67 15 3 H 0.07 2.75 8.14 -2.38 -0.02 2.73 15 4 C -0.13 -5.73 5.79 31.85 0.18 -5.54 15 5 C 0.21 10.58 0.99 -10.66 -0.01 10.57 15 6 O -0.60 -33.11 12.92 -148.98 -1.93 -35.03 15 7 C -0.56 -30.86 8.07 25.60 0.21 -30.65 15 8 H 0.05 2.93 7.56 -2.91 -0.02 2.90 15 9 C 0.03 1.36 5.02 84.65 0.42 1.78 15 10 N -0.91 -49.92 10.78 21.45 0.23 -49.69 15 11 Si 0.96 42.48 29.54 68.60 2.03 44.50 15 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 13 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 14 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 15 C 0.06 2.78 6.19 86.45 0.53 3.31 15 16 N -0.67 -27.04 7.33 -480.05 -3.52 -30.56 15 17 H 0.06 1.54 8.13 -2.39 -0.02 1.52 15 18 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 19 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 20 H 0.07 2.97 7.60 -2.39 -0.02 2.95 15 21 H 0.06 2.53 8.08 -2.39 -0.02 2.51 15 22 H 0.37 21.03 7.17 -74.06 -0.53 20.50 15 23 H 0.27 14.07 8.31 -92.71 -0.77 13.30 15 24 H 0.04 1.95 7.96 -2.39 -0.02 1.93 15 25 H 0.05 2.52 7.22 -2.39 -0.02 2.50 15 26 H 0.34 12.34 8.62 -89.69 -0.77 11.57 15 Total: -1.00 -58.09 216.32 -1.12 -59.21 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.13 Total: 32.37 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 2.19 Total: -20.80 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -3.29 Total: -80.25 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.93 Total: -35.03 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -58.09 -1.12 -59.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228812.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.948 kcal (2) G-P(sol) polarization free energy of solvation -58.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds