Wall clock time and date at job start Mon Mar 30 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.90965 * 2 1 4 4 C 1.53996 * 109.91897 * 121.30890 * 2 1 3 5 5 C 1.54591 * 105.13656 * 120.57462 * 4 2 1 6 6 O 1.42902 * 110.72622 * 263.60022 * 5 4 2 7 7 C 1.50706 * 110.72503 * 140.49476 * 5 4 2 8 8 H 1.08003 * 119.99333 * 359.97438 * 7 5 4 9 9 C 1.37867 * 120.00341 * 179.97438 * 7 5 4 10 10 N 1.31513 * 120.00267 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 120.00248 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.46952 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47232 * 119.99628 * 11 9 7 14 14 H 1.48496 * 109.47448 * 240.00567 * 11 9 7 15 15 C 1.54933 * 102.92615 * 21.95797 * 5 4 2 16 16 N 1.47906 * 109.91439 * 238.90188 * 2 1 3 17 17 H 1.09000 * 109.47289 * 179.64821 * 1 2 3 18 18 H 1.09005 * 109.46822 * 299.64987 * 1 2 3 19 19 H 1.08998 * 109.47031 * 59.64095 * 1 2 3 20 20 H 1.08993 * 110.30544 * 239.48853 * 4 2 1 21 21 H 1.08995 * 110.30651 * 1.56453 * 4 2 1 22 22 H 0.96699 * 114.00026 * 180.02562 * 6 5 4 23 23 H 0.97005 * 120.00299 * 179.97438 * 10 9 7 24 24 H 1.09004 * 110.67035 * 204.14644 * 15 5 4 25 25 H 1.09002 * 110.66721 * 81.02111 * 15 5 4 26 26 H 1.00905 * 110.99753 * 335.82840 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0547 -0.7524 1.2370 5 6 2.9058 -1.9129 0.6726 6 8 2.1396 -3.1174 0.6085 7 6 4.1472 -2.1165 1.5026 8 1 4.3329 -1.4862 2.3598 9 6 5.0455 -3.1073 1.1678 10 7 4.8195 -3.8745 0.1238 11 14 6.5845 -3.3591 2.1962 12 1 6.6045 -2.3734 3.3068 13 1 6.5862 -4.7347 2.7559 14 1 7.7858 -3.1698 1.3441 15 6 3.2680 -1.4172 -0.7499 16 7 2.0338 -0.7183 -1.1908 17 1 -0.3634 -1.0276 -0.0063 18 1 -0.3633 0.5084 0.8932 19 1 -0.3633 0.5194 -0.8867 20 1 2.6715 -0.0929 1.8474 21 1 1.2228 -1.1419 1.8238 22 1 2.6281 -3.8763 0.2614 23 1 5.4518 -4.5713 -0.1120 24 1 3.4887 -2.2591 -1.4061 25 1 4.1097 -0.7255 -0.7135 26 1 1.3489 -1.3753 -1.5333 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885228813.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:08 Heat of formation + Delta-G solvation = -81.835311 kcal Electronic energy + Delta-G solvation = -10483.921438 eV Core-core repulsion = 8560.954062 eV Total energy + Delta-G solvation = -1922.967376 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.99553 -36.21901 -34.14996 -31.56361 -30.53967 -27.11763 -25.42454 -22.09949 -20.82499 -19.11871 -17.11904 -16.69392 -16.21264 -15.73629 -14.94679 -14.56318 -13.94282 -13.47153 -13.18318 -13.08371 -12.78014 -12.52812 -12.29093 -12.07603 -11.91905 -11.73332 -11.16909 -10.70628 -10.43878 -9.23916 -8.25342 -6.39949 1.38004 1.40952 1.51833 2.36559 2.99410 3.52292 3.90023 4.14904 4.33789 4.40426 4.62262 4.78312 4.82052 4.95732 5.13848 5.22029 5.38094 5.43192 5.49999 5.77241 5.91738 6.12931 6.58011 6.66651 7.30874 7.42237 8.80278 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.082977 B = 0.015138 C = 0.014593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.360727 B = 1849.254011 C = 1918.286150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 H 0.082 0.918 4 C -0.131 4.131 5 C 0.206 3.794 6 O -0.597 6.597 7 C -0.560 4.560 8 H 0.053 0.947 9 C 0.026 3.974 10 N -0.916 5.916 11 Si 0.963 3.037 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.046 3.954 16 N -0.674 5.674 17 H 0.046 0.954 18 H 0.074 0.926 19 H 0.072 0.928 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.376 0.624 23 H 0.271 0.729 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 4.163 -0.065 5.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 H 0.100 0.900 4 C -0.170 4.170 5 C 0.165 3.835 6 O -0.406 6.406 7 C -0.599 4.599 8 H 0.071 0.929 9 C -0.174 4.174 10 N -0.556 5.556 11 Si 0.789 3.211 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.202 1.202 15 C -0.084 4.084 16 N -0.301 5.301 17 H 0.065 0.935 18 H 0.093 0.907 19 H 0.091 0.909 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.227 0.773 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.785 5.006 -0.275 6.282 hybrid contribution 1.113 -1.508 0.826 2.048 sum -2.672 3.498 0.551 4.436 Atomic orbital electron populations 1.21959 0.93157 1.01767 1.03014 1.22404 0.95928 0.97964 0.88134 0.89952 1.22805 0.99112 0.96546 0.98540 1.20324 0.88392 0.82474 0.92335 1.86069 1.44047 1.22011 1.88515 1.21957 1.06592 1.17790 1.13549 0.92883 1.25751 1.00845 0.94932 0.95846 1.69662 1.38272 1.20813 1.26845 0.85432 0.79030 0.77940 0.78738 1.19643 1.20389 1.20152 1.23329 0.91975 0.96010 0.97080 1.63057 1.07250 1.29779 1.30000 0.93524 0.90742 0.90948 0.91614 0.92285 0.77323 0.91961 0.92593 0.92695 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.94 71.98 0.64 -3.49 15 2 C 0.07 2.41 4.02 45.06 0.18 2.60 15 3 H 0.08 2.86 8.14 -2.38 -0.02 2.84 15 4 C -0.13 -5.68 5.89 31.47 0.19 -5.49 15 5 C 0.21 10.44 0.96 -10.34 -0.01 10.43 15 6 O -0.60 -31.75 13.10 -148.98 -1.95 -33.70 15 7 C -0.56 -30.82 8.23 25.60 0.21 -30.61 15 8 H 0.05 2.92 7.55 -2.91 -0.02 2.89 15 9 C 0.03 1.40 5.28 84.65 0.45 1.85 15 10 N -0.92 -49.48 10.63 21.44 0.23 -49.26 15 11 Si 0.96 42.61 29.54 68.60 2.03 44.63 15 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 13 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 14 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 15 C 0.05 2.22 6.18 86.65 0.54 2.76 15 16 N -0.67 -27.31 7.40 -480.18 -3.55 -30.87 15 17 H 0.05 1.45 8.12 -2.39 -0.02 1.43 15 18 H 0.07 1.89 8.14 -2.38 -0.02 1.87 15 19 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.07 2.80 7.67 -2.39 -0.02 2.78 15 21 H 0.06 2.52 7.63 -2.39 -0.02 2.50 15 22 H 0.38 20.61 6.98 -74.06 -0.52 20.09 15 23 H 0.27 13.84 8.31 -92.70 -0.77 13.07 15 24 H 0.06 2.87 7.67 -2.38 -0.02 2.85 15 25 H 0.05 2.75 8.05 -2.39 -0.02 2.73 15 26 H 0.33 12.96 8.39 -89.69 -0.75 12.21 15 Total: -1.00 -56.61 216.29 -1.15 -57.76 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.09 Total: 33.39 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 2.19 Total: -21.96 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.32 Total: -80.12 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.95 Total: -33.70 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -56.61 -1.15 -57.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228813.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.072 kcal (2) G-P(sol) polarization free energy of solvation -56.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds