Wall clock time and date at job start Mon Mar 30 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.00781 * 2 1 4 4 C 1.54318 * 109.89195 * 238.88544 * 2 1 3 5 5 C 1.55138 * 103.01792 * 218.30972 * 4 2 1 6 6 O 1.42902 * 111.01983 * 277.54275 * 5 4 2 7 7 C 1.50702 * 110.99045 * 153.74778 * 5 4 2 8 8 H 1.08003 * 119.99981 * 6.26798 * 7 5 4 9 9 C 1.37875 * 119.99996 * 186.28066 * 7 5 4 10 10 N 1.31518 * 120.00237 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99954 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47430 * 59.99454 * 11 9 7 13 13 H 1.48505 * 109.46844 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46838 * 299.99182 * 11 9 7 15 15 C 1.54906 * 101.65573 * 35.65159 * 5 4 2 16 16 N 1.47446 * 109.89086 * 121.11296 * 2 1 3 17 17 H 1.08994 * 109.47153 * 300.33559 * 1 2 3 18 18 H 1.08996 * 109.47353 * 60.34640 * 1 2 3 19 19 H 1.09010 * 109.46563 * 180.33876 * 1 2 3 20 20 H 1.09003 * 110.70170 * 336.68767 * 4 2 1 21 21 H 1.09002 * 110.70518 * 99.92159 * 4 2 1 22 22 H 0.96705 * 113.99921 * 173.74472 * 6 5 4 23 23 H 0.96991 * 120.00122 * 180.02562 * 10 9 7 24 24 H 1.08998 * 110.36925 * 204.09914 * 15 5 4 25 25 H 1.08996 * 110.36967 * 81.76153 * 15 5 4 26 26 H 1.00901 * 110.99791 * 240.68545 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0551 -0.7499 -1.2423 5 6 3.2892 -1.5133 -0.6940 6 8 4.4389 -0.6657 -0.6512 7 6 3.5645 -2.7507 -1.5090 8 1 2.9969 -2.9428 -2.4076 9 6 4.5407 -3.6377 -1.1074 10 7 5.2320 -3.4037 -0.0134 11 14 4.8814 -5.1718 -2.1173 12 1 5.2947 -4.7801 -3.4887 13 1 5.9694 -5.9542 -1.4773 14 1 3.6513 -6.0006 -2.1888 15 6 2.8190 -1.8832 0.7349 16 7 2.0317 -0.7164 1.1870 17 1 -0.3633 0.5190 0.8869 18 1 -0.3634 0.5084 -0.8930 19 1 -0.3633 -1.0278 0.0061 20 1 1.3056 -1.4472 -1.6168 21 1 2.3514 -0.0464 -2.0204 22 1 5.2092 -1.0687 -0.2275 23 1 5.9190 -4.0275 0.2689 24 1 3.6773 -2.0382 1.3885 25 1 2.1941 -2.7759 0.7094 26 1 2.5884 -0.1078 1.7682 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885228814.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:09 Heat of formation + Delta-G solvation = -59.741486 kcal Electronic energy + Delta-G solvation = -10462.883203 eV Core-core repulsion = 8540.873887 eV Total energy + Delta-G solvation = -1922.009316 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.09552 -34.24887 -32.15526 -29.94890 -28.63592 -25.30497 -23.88800 -19.65004 -19.17107 -16.94143 -15.97046 -14.95800 -14.24881 -13.48104 -13.20766 -12.58358 -12.29925 -11.81978 -11.40831 -11.21298 -10.95331 -10.70272 -10.48625 -10.42527 -10.15198 -9.93333 -9.19948 -8.66832 -8.41288 -7.38289 -6.20067 -4.27461 3.25011 3.29545 3.32713 4.31428 5.07090 5.14537 5.57371 5.83483 5.99288 6.07994 6.30438 6.41334 6.49394 6.59701 6.78950 6.90672 7.07373 7.41542 7.48047 7.79564 7.81589 8.17751 8.31104 8.74773 9.37836 9.45550 10.86810 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.073311 B = 0.015508 C = 0.014728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.843152 B = 1805.066270 C = 1900.715378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.072 3.928 3 H 0.048 0.952 4 C -0.119 4.119 5 C 0.225 3.775 6 O -0.589 6.589 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.041 3.959 16 N -0.690 5.690 17 H 0.046 0.954 18 H 0.046 0.954 19 H 0.054 0.946 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.378 0.622 23 H 0.267 0.733 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 2.871 0.483 4.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.038 4.038 3 H 0.066 0.934 4 C -0.158 4.158 5 C 0.185 3.815 6 O -0.398 6.398 7 C -0.571 4.571 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.728 3.272 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 C -0.088 4.088 16 N -0.318 5.318 17 H 0.066 0.934 18 H 0.065 0.935 19 H 0.073 0.927 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.227 0.773 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.789 2.839 0.430 5.584 hybrid contribution 1.463 -0.902 -0.538 1.800 sum -3.327 1.938 -0.108 3.851 Atomic orbital electron populations 1.21756 0.95704 1.01497 0.99892 1.22068 0.94654 0.96273 0.90839 0.93413 1.22748 0.97784 0.98760 0.96488 1.20113 0.82545 0.87372 0.91519 1.86106 1.24229 1.45684 1.83766 1.21513 1.19697 1.05652 1.10211 0.92178 1.25032 0.95288 0.98128 0.94809 1.69703 1.23456 1.37810 1.22904 0.86510 0.77960 0.82391 0.80295 1.20139 1.21129 1.20084 1.23423 0.95520 0.91708 0.98168 1.61844 1.41084 1.10543 1.18286 0.93442 0.93512 0.92660 0.91041 0.92328 0.77277 0.92295 0.91034 0.91572 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.41 37.16 0.35 -1.82 15 2 C 0.07 1.42 3.97 -66.72 -0.27 1.15 15 3 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 4 C -0.12 -2.66 5.65 -24.91 -0.14 -2.80 15 5 C 0.23 5.73 0.87 -89.63 -0.08 5.65 15 6 O -0.59 -15.51 13.16 -35.23 -0.46 -15.98 15 7 C -0.53 -14.62 8.27 -34.44 -0.28 -14.90 15 8 H 0.06 1.64 7.79 -52.48 -0.41 1.23 15 9 C 0.07 1.87 5.29 -17.82 -0.09 1.77 15 10 N -0.90 -24.27 10.68 55.43 0.59 -23.68 15 11 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 15 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 14 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 15 C 0.04 0.98 6.05 -2.30 -0.01 0.97 15 16 N -0.69 -14.39 7.02 -103.82 -0.73 -15.12 15 17 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 18 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 19 H 0.05 0.95 8.14 -51.92 -0.42 0.53 15 20 H 0.07 1.56 7.74 -51.93 -0.40 1.15 15 21 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 22 H 0.38 9.99 7.56 45.56 0.34 10.34 15 23 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 24 H 0.07 1.81 7.43 -51.93 -0.39 1.42 15 25 H 0.07 1.68 8.03 -51.93 -0.42 1.27 15 26 H 0.32 6.34 8.91 -39.29 -0.35 5.99 15 LS Contribution 217.70 15.07 3.28 3.28 Total: -1.00 -27.51 217.70 -5.74 -33.24 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -2.87 Total: 12.32 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.53 Total: -9.98 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: -0.14 Total: -38.80 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.46 Total: -15.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -27.51 -5.74 -33.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228814.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.500 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds