Wall clock time and date at job start Mon Mar 30 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.00781 * 2 1 4 4 C 1.54318 * 109.89195 * 238.88544 * 2 1 3 5 5 C 1.55138 * 103.01792 * 218.30972 * 4 2 1 6 6 O 1.42902 * 111.01983 * 277.54275 * 5 4 2 7 7 C 1.50702 * 110.99045 * 153.74778 * 5 4 2 8 8 H 1.08003 * 119.99981 * 6.26798 * 7 5 4 9 9 C 1.37875 * 119.99996 * 186.28066 * 7 5 4 10 10 N 1.31518 * 120.00237 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99954 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47430 * 59.99454 * 11 9 7 13 13 H 1.48505 * 109.46844 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46838 * 299.99182 * 11 9 7 15 15 C 1.54906 * 101.65573 * 35.65159 * 5 4 2 16 16 N 1.47446 * 109.89086 * 121.11296 * 2 1 3 17 17 H 1.08994 * 109.47153 * 300.33559 * 1 2 3 18 18 H 1.08996 * 109.47353 * 60.34640 * 1 2 3 19 19 H 1.09010 * 109.46563 * 180.33876 * 1 2 3 20 20 H 1.09003 * 110.70170 * 336.68767 * 4 2 1 21 21 H 1.09002 * 110.70518 * 99.92159 * 4 2 1 22 22 H 0.96705 * 113.99921 * 173.74472 * 6 5 4 23 23 H 0.96991 * 120.00122 * 180.02562 * 10 9 7 24 24 H 1.08998 * 110.36925 * 204.09914 * 15 5 4 25 25 H 1.08996 * 110.36967 * 81.76153 * 15 5 4 26 26 H 1.00901 * 110.99791 * 240.68545 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0551 -0.7499 -1.2423 5 6 3.2892 -1.5133 -0.6940 6 8 4.4389 -0.6657 -0.6512 7 6 3.5645 -2.7507 -1.5090 8 1 2.9969 -2.9428 -2.4076 9 6 4.5407 -3.6377 -1.1074 10 7 5.2320 -3.4037 -0.0134 11 14 4.8814 -5.1718 -2.1173 12 1 5.2947 -4.7801 -3.4887 13 1 5.9694 -5.9542 -1.4773 14 1 3.6513 -6.0006 -2.1888 15 6 2.8190 -1.8832 0.7349 16 7 2.0317 -0.7164 1.1870 17 1 -0.3633 0.5190 0.8869 18 1 -0.3634 0.5084 -0.8930 19 1 -0.3633 -1.0278 0.0061 20 1 1.3056 -1.4472 -1.6168 21 1 2.3514 -0.0464 -2.0204 22 1 5.2092 -1.0687 -0.2275 23 1 5.9190 -4.0275 0.2689 24 1 3.6773 -2.0382 1.3885 25 1 2.1941 -2.7759 0.7094 26 1 2.5884 -0.1078 1.7682 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885228814.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:09 Heat of formation + Delta-G solvation = -81.162973 kcal Electronic energy + Delta-G solvation = -10463.812109 eV Core-core repulsion = 8540.873887 eV Total energy + Delta-G solvation = -1922.938221 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.92277 -36.14423 -34.23054 -31.57827 -30.52407 -27.13599 -25.71937 -21.56972 -20.85294 -18.98740 -17.69220 -17.00602 -16.15061 -15.32195 -14.94346 -14.33071 -14.00747 -13.60689 -13.14576 -13.00935 -12.78971 -12.41614 -12.32307 -12.26454 -11.94152 -11.71174 -11.09513 -10.67483 -10.39581 -9.17917 -8.23580 -6.39272 1.40847 1.41294 1.49486 2.37279 3.00580 3.48276 3.85697 4.12712 4.27118 4.48601 4.67594 4.78603 5.00113 5.00189 5.10110 5.14398 5.44045 5.47579 5.53180 5.76245 6.02811 6.16832 6.63893 6.66209 7.29645 7.36354 8.81092 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.073311 B = 0.015508 C = 0.014728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.843152 B = 1805.066270 C = 1900.715378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.071 3.929 3 H 0.058 0.942 4 C -0.118 4.118 5 C 0.207 3.793 6 O -0.594 6.594 7 C -0.562 4.562 8 H 0.052 0.948 9 C 0.029 3.971 10 N -0.913 5.913 11 Si 0.961 3.039 12 H -0.275 1.275 13 H -0.279 1.279 14 H -0.271 1.271 15 C 0.056 3.944 16 N -0.683 5.683 17 H 0.063 0.937 18 H 0.068 0.932 19 H 0.045 0.955 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.373 0.627 23 H 0.270 0.730 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 3.036 0.322 5.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.038 4.038 3 H 0.076 0.924 4 C -0.157 4.157 5 C 0.167 3.833 6 O -0.402 6.402 7 C -0.601 4.601 8 H 0.071 0.929 9 C -0.172 4.172 10 N -0.552 5.552 11 Si 0.786 3.214 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.197 1.197 15 C -0.074 4.074 16 N -0.311 5.311 17 H 0.082 0.918 18 H 0.087 0.913 19 H 0.064 0.936 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.222 0.778 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.444 3.021 0.274 6.232 hybrid contribution 1.677 -0.924 -0.485 1.976 sum -3.767 2.098 -0.211 4.317 Atomic orbital electron populations 1.21692 0.92955 1.01540 1.01882 1.22191 0.96770 0.96035 0.88844 0.92364 1.22754 0.96502 0.98747 0.97677 1.20361 0.83152 0.87489 0.92313 1.86096 1.24454 1.45893 1.83785 1.21792 1.20526 1.07130 1.10610 0.92939 1.25735 0.94983 1.00686 0.95787 1.69784 1.23383 1.38495 1.23548 0.85569 0.77946 0.79072 0.78785 1.20038 1.20379 1.19652 1.23067 0.94727 0.92349 0.97260 1.61854 1.40360 1.10112 1.18789 0.91756 0.91278 0.93577 0.90945 0.92319 0.77812 0.92090 0.92753 0.93423 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 9.41 71.98 0.68 -3.04 15 2 C 0.07 2.67 3.97 45.26 0.18 2.85 15 3 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 4 C -0.12 -5.16 5.65 31.77 0.18 -4.98 15 5 C 0.21 10.54 0.87 -10.16 -0.01 10.53 15 6 O -0.59 -31.30 13.16 -148.98 -1.96 -33.27 15 7 C -0.56 -30.98 8.27 25.60 0.21 -30.77 15 8 H 0.05 2.88 7.79 -2.91 -0.02 2.86 15 9 C 0.03 1.54 5.29 84.65 0.45 1.99 15 10 N -0.91 -49.28 10.68 21.45 0.23 -49.05 15 11 Si 0.96 42.62 29.54 68.60 2.03 44.64 15 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 13 H -0.28 -11.95 7.11 99.48 0.71 -11.25 15 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 15 C 0.06 2.68 6.05 86.77 0.52 3.21 15 16 N -0.68 -27.55 7.02 -482.37 -3.39 -30.94 15 17 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 18 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 19 H 0.05 1.48 8.14 -2.38 -0.02 1.46 15 20 H 0.07 3.09 7.74 -2.39 -0.02 3.07 15 21 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.37 19.96 7.56 -74.05 -0.56 19.40 15 23 H 0.27 13.87 8.31 -92.71 -0.77 13.10 15 24 H 0.05 2.77 7.43 -2.39 -0.02 2.75 15 25 H 0.05 2.44 8.03 -2.39 -0.02 2.42 15 26 H 0.33 12.51 8.91 -89.69 -0.80 11.71 15 Total: -1.00 -56.68 217.70 -1.06 -57.74 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.18 Total: 31.09 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 2.21 Total: -20.22 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -3.16 Total: -79.99 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -1.96 Total: -33.27 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -56.68 -1.06 -57.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228814.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.422 kcal (2) G-P(sol) polarization free energy of solvation -56.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds