Wall clock time and date at job start Mon Mar 30 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.36746 * 2 1 4 4 C 1.54376 * 110.41566 * 237.64682 * 2 1 3 5 5 C 1.54255 * 105.06351 * 217.36937 * 4 2 1 6 6 O 1.42906 * 110.32712 * 118.99650 * 5 4 2 7 7 C 1.50699 * 110.32731 * 241.10088 * 5 4 2 8 8 H 1.08007 * 119.99735 * 359.97438 * 7 5 4 9 9 C 1.37874 * 120.00387 * 179.97438 * 7 5 4 10 10 N 1.31518 * 119.99778 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00033 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47157 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47348 * 120.00047 * 11 9 7 14 14 H 1.48503 * 109.47302 * 240.00154 * 11 9 7 15 15 C 1.54376 * 105.06109 * 359.97438 * 5 4 2 16 16 N 1.48561 * 110.41140 * 122.34295 * 2 1 3 17 17 H 1.09002 * 109.47153 * 180.70260 * 1 2 3 18 18 H 1.09001 * 109.46832 * 60.70451 * 1 2 3 19 19 H 1.09004 * 109.47261 * 300.70432 * 1 2 3 20 20 H 1.08998 * 110.31894 * 336.26523 * 4 2 1 21 21 H 1.09001 * 110.32761 * 98.46976 * 4 2 1 22 22 H 0.96697 * 114.00173 * 180.02562 * 6 5 4 23 23 H 0.97006 * 119.99383 * 179.97438 * 10 9 7 24 24 H 1.08999 * 110.41743 * 142.63366 * 15 5 4 25 25 H 1.09001 * 110.41309 * 264.95484 * 15 5 4 26 26 H 1.00897 * 111.00484 * 277.82376 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 6 3.3178 -1.5180 -0.7069 6 8 3.1462 -2.9302 -0.8433 7 6 4.5433 -1.0658 -1.4583 8 1 4.4563 -0.3190 -2.2337 9 6 5.7756 -1.6052 -1.1558 10 7 5.8814 -2.5149 -0.2119 11 14 7.2947 -1.0440 -2.0867 12 1 6.9099 -0.0194 -3.0904 13 1 8.2718 -0.4596 -1.1332 14 1 7.9104 -2.2063 -2.7761 15 6 3.4294 -1.1302 0.7831 16 7 2.0481 -0.7449 1.1763 17 1 -0.3633 -1.0276 0.0126 18 1 -0.3633 0.5029 -0.8963 19 1 -0.3634 0.5247 0.8836 20 1 1.3236 -1.4863 -1.5774 21 1 2.3417 -0.0820 -2.0186 22 1 3.9010 -3.4498 -0.5345 23 1 6.7484 -2.8946 0.0006 24 1 3.7694 -1.9813 1.3731 25 1 4.1094 -0.2873 0.9066 26 1 2.0541 -0.1618 1.9997 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885228815.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:10 Heat of formation + Delta-G solvation = -58.142724 kcal Electronic energy + Delta-G solvation = -10442.586403 eV Core-core repulsion = 8520.646414 eV Total energy + Delta-G solvation = -1921.939988 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.99148 -34.34934 -32.04657 -30.06311 -28.68268 -25.23674 -23.74759 -19.95678 -19.04674 -17.15800 -15.44015 -14.91506 -14.30938 -13.78101 -13.20858 -12.49634 -12.16958 -11.57904 -11.51389 -11.32360 -11.00220 -10.79740 -10.44869 -10.39596 -10.23237 -9.93922 -9.19462 -8.58588 -8.05045 -7.68141 -6.20770 -4.28593 3.21027 3.29654 3.33906 4.30508 5.04399 5.13546 5.55764 5.73906 5.96191 6.21479 6.24457 6.28900 6.40019 6.62538 6.79280 6.98458 7.01179 7.34062 7.54033 7.61671 7.83081 8.15981 8.23869 8.75928 9.40769 9.65088 10.86429 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.074547 B = 0.015323 C = 0.014701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.514060 B = 1826.862630 C = 1904.192387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.060 3.940 3 H 0.037 0.963 4 C -0.105 4.105 5 C 0.251 3.749 6 O -0.586 6.586 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.897 5.897 11 Si 0.900 3.100 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.035 3.965 16 N -0.669 5.669 17 H 0.060 0.940 18 H 0.050 0.950 19 H 0.044 0.956 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.380 0.620 23 H 0.267 0.733 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 3.921 0.870 5.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.050 4.050 3 H 0.055 0.945 4 C -0.143 4.143 5 C 0.211 3.789 6 O -0.395 6.395 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.134 4.134 10 N -0.538 5.538 11 Si 0.728 3.272 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.207 1.207 15 C -0.094 4.094 16 N -0.297 5.297 17 H 0.079 0.921 18 H 0.069 0.931 19 H 0.063 0.937 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.230 0.770 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.784 3.333 0.587 5.860 hybrid contribution 2.064 1.042 -0.072 2.313 sum -2.720 4.375 0.515 5.177 Atomic orbital electron populations 1.21695 0.95213 1.01929 1.00141 1.22400 0.94594 0.95302 0.92679 0.94462 1.22346 0.98129 0.97986 0.95789 1.19234 0.90829 0.79613 0.89267 1.86130 1.46514 1.19071 1.87779 1.21868 0.92169 1.23477 1.20047 0.92016 1.25065 0.99232 0.94539 0.94604 1.69646 1.25309 1.28211 1.30599 0.86410 0.82357 0.78690 0.79780 1.19710 1.20902 1.20726 1.23592 0.86098 0.99556 1.00111 1.63828 1.21825 1.40124 1.03873 0.92087 0.93066 0.93667 0.91873 0.91886 0.76964 0.92292 0.90659 0.94848 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.47 37.16 0.35 -1.78 15 2 C 0.06 1.19 3.78 -66.07 -0.25 0.94 15 3 H 0.04 0.71 8.14 -51.93 -0.42 0.28 15 4 C -0.10 -2.37 6.00 -25.35 -0.15 -2.53 15 5 C 0.25 6.55 1.06 -90.39 -0.10 6.46 15 6 O -0.59 -16.24 12.95 -35.23 -0.46 -16.70 15 7 C -0.54 -14.81 8.10 -34.44 -0.28 -15.09 15 8 H 0.06 1.69 7.36 -52.48 -0.39 1.30 15 9 C 0.07 1.82 5.26 -17.82 -0.09 1.73 15 10 N -0.90 -24.47 10.82 55.43 0.60 -23.87 15 11 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 15 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 15 C 0.04 0.87 5.93 -2.11 -0.01 0.85 15 16 N -0.67 -14.01 7.29 -102.64 -0.75 -14.76 15 17 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 18 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 19 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.06 1.43 7.70 -51.93 -0.40 1.03 15 21 H 0.06 1.38 7.42 -51.93 -0.39 1.00 15 22 H 0.38 10.60 7.05 45.56 0.32 10.92 15 23 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 24 H 0.08 1.96 7.98 -51.93 -0.41 1.54 15 25 H 0.03 0.84 7.85 -51.93 -0.41 0.43 15 26 H 0.31 5.74 8.93 -39.29 -0.35 5.39 15 LS Contribution 216.68 15.07 3.27 3.27 Total: -1.00 -28.35 216.68 -5.74 -34.09 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -2.85 Total: 11.52 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.53 Total: -9.42 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.15 Total: -38.63 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.46 Total: -16.70 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -28.35 -5.74 -34.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228815.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.049 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds