Wall clock time and date at job start Mon Mar 30 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.36746 * 2 1 4 4 C 1.54376 * 110.41566 * 237.64682 * 2 1 3 5 5 C 1.54255 * 105.06351 * 217.36937 * 4 2 1 6 6 O 1.42906 * 110.32712 * 118.99650 * 5 4 2 7 7 C 1.50699 * 110.32731 * 241.10088 * 5 4 2 8 8 H 1.08007 * 119.99735 * 359.97438 * 7 5 4 9 9 C 1.37874 * 120.00387 * 179.97438 * 7 5 4 10 10 N 1.31518 * 119.99778 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00033 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47157 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47348 * 120.00047 * 11 9 7 14 14 H 1.48503 * 109.47302 * 240.00154 * 11 9 7 15 15 C 1.54376 * 105.06109 * 359.97438 * 5 4 2 16 16 N 1.48561 * 110.41140 * 122.34295 * 2 1 3 17 17 H 1.09002 * 109.47153 * 180.70260 * 1 2 3 18 18 H 1.09001 * 109.46832 * 60.70451 * 1 2 3 19 19 H 1.09004 * 109.47261 * 300.70432 * 1 2 3 20 20 H 1.08998 * 110.31894 * 336.26523 * 4 2 1 21 21 H 1.09001 * 110.32761 * 98.46976 * 4 2 1 22 22 H 0.96697 * 114.00173 * 180.02562 * 6 5 4 23 23 H 0.97006 * 119.99383 * 179.97438 * 10 9 7 24 24 H 1.08999 * 110.41743 * 142.63366 * 15 5 4 25 25 H 1.09001 * 110.41309 * 264.95484 * 15 5 4 26 26 H 1.00897 * 111.00484 * 277.82376 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 6 3.3178 -1.5180 -0.7069 6 8 3.1462 -2.9302 -0.8433 7 6 4.5433 -1.0658 -1.4583 8 1 4.4563 -0.3190 -2.2337 9 6 5.7756 -1.6052 -1.1558 10 7 5.8814 -2.5149 -0.2119 11 14 7.2947 -1.0440 -2.0867 12 1 6.9099 -0.0194 -3.0904 13 1 8.2718 -0.4596 -1.1332 14 1 7.9104 -2.2063 -2.7761 15 6 3.4294 -1.1302 0.7831 16 7 2.0481 -0.7449 1.1763 17 1 -0.3633 -1.0276 0.0126 18 1 -0.3633 0.5029 -0.8963 19 1 -0.3634 0.5247 0.8836 20 1 1.3236 -1.4863 -1.5774 21 1 2.3417 -0.0820 -2.0186 22 1 3.9010 -3.4498 -0.5345 23 1 6.7484 -2.8946 0.0006 24 1 3.7694 -1.9813 1.3731 25 1 4.1094 -0.2873 0.9066 26 1 2.0541 -0.1618 1.9997 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885228815.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:10 Heat of formation + Delta-G solvation = -80.583202 kcal Electronic energy + Delta-G solvation = -10443.559495 eV Core-core repulsion = 8520.646414 eV Total energy + Delta-G solvation = -1922.913081 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.83214 -36.28342 -34.15280 -31.67644 -30.59345 -27.10523 -25.57114 -21.75703 -20.86009 -19.20099 -17.22702 -16.96195 -16.17657 -15.60546 -14.95388 -14.25615 -13.87241 -13.47325 -13.32597 -13.03463 -12.84391 -12.42285 -12.32063 -12.20790 -12.07492 -11.73373 -11.10214 -10.62856 -10.14235 -9.40547 -8.25227 -6.41603 1.37896 1.40814 1.51926 2.36265 2.99137 3.49154 3.94058 4.06474 4.34304 4.38876 4.65104 4.77056 4.91568 4.98431 5.10123 5.16952 5.36168 5.44905 5.52451 5.77921 5.83016 6.17503 6.58165 6.69942 7.30912 7.48559 8.80881 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.074547 B = 0.015323 C = 0.014701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.514060 B = 1826.862630 C = 1904.192387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.062 3.938 3 H 0.049 0.951 4 C -0.106 4.106 5 C 0.230 3.770 6 O -0.597 6.597 7 C -0.564 4.564 8 H 0.056 0.944 9 C 0.025 3.975 10 N -0.915 5.915 11 Si 0.964 3.036 12 H -0.270 1.270 13 H -0.276 1.276 14 H -0.278 1.278 15 C 0.050 3.950 16 N -0.669 5.669 17 H 0.049 0.951 18 H 0.072 0.928 19 H 0.068 0.932 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.374 0.626 23 H 0.271 0.729 24 H 0.052 0.948 25 H 0.020 0.980 26 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 4.994 0.779 6.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.048 4.048 3 H 0.067 0.933 4 C -0.144 4.144 5 C 0.190 3.810 6 O -0.406 6.406 7 C -0.602 4.602 8 H 0.075 0.925 9 C -0.175 4.175 10 N -0.555 5.555 11 Si 0.789 3.211 12 H -0.195 1.195 13 H -0.202 1.202 14 H -0.203 1.203 15 C -0.080 4.080 16 N -0.298 5.298 17 H 0.068 0.932 18 H 0.091 0.909 19 H 0.087 0.913 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.223 0.777 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.150 4.418 0.506 6.804 hybrid contribution 2.154 0.694 -0.035 2.264 sum -2.996 5.113 0.472 5.944 Atomic orbital electron populations 1.21636 0.92113 1.01971 1.02413 1.22493 0.96959 0.94957 0.90365 0.93295 1.22373 0.96690 0.97962 0.97358 1.19584 0.92181 0.78879 0.90393 1.86123 1.46291 1.20248 1.87929 1.22102 0.93400 1.24081 1.20634 0.92529 1.25808 1.01875 0.94527 0.95332 1.69730 1.26092 1.28499 1.31166 0.85415 0.78785 0.78271 0.78579 1.19453 1.20196 1.20333 1.23223 0.87760 0.98134 0.98883 1.63760 1.19346 1.41449 1.05241 0.93151 0.90922 0.91328 0.92289 0.91608 0.77656 0.91975 0.92961 0.96147 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.59 9.47 71.98 0.68 -2.91 15 2 C 0.06 2.30 3.78 45.06 0.17 2.47 15 3 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 4 C -0.11 -4.72 6.00 31.49 0.19 -4.53 15 5 C 0.23 12.03 1.06 -10.65 -0.01 12.02 15 6 O -0.60 -33.61 12.95 -148.98 -1.93 -35.54 15 7 C -0.56 -31.19 8.10 25.60 0.21 -30.98 15 8 H 0.06 3.10 7.36 -2.91 -0.02 3.07 15 9 C 0.02 1.33 5.26 84.65 0.45 1.78 15 10 N -0.91 -50.14 10.82 21.45 0.23 -49.91 15 11 Si 0.96 42.59 29.54 68.60 2.03 44.61 15 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 13 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 14 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 15 C 0.05 2.44 5.93 86.42 0.51 2.95 15 16 N -0.67 -27.03 7.29 -478.66 -3.49 -30.52 15 17 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 18 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 19 H 0.07 1.69 8.14 -2.38 -0.02 1.67 15 20 H 0.06 2.63 7.70 -2.39 -0.02 2.61 15 21 H 0.07 2.83 7.42 -2.39 -0.02 2.81 15 22 H 0.37 21.38 7.05 -74.06 -0.52 20.85 15 23 H 0.27 13.99 8.31 -92.70 -0.77 13.22 15 24 H 0.05 2.76 7.98 -2.39 -0.02 2.74 15 25 H 0.02 1.02 7.85 -2.39 -0.02 1.01 15 26 H 0.33 11.46 8.93 -89.70 -0.80 10.66 15 Total: -1.00 -59.25 216.68 -1.11 -60.36 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.15 Total: 30.19 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 2.19 Total: -19.20 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.26 Total: -80.43 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.93 Total: -35.54 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -59.25 -1.11 -60.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228815.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.221 kcal (2) G-P(sol) polarization free energy of solvation -59.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds