Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47059 * 2 1 4 4 C 1.47479 * 111.00130 * 190.00028 * 3 2 1 5 5 C 1.53517 * 87.99753 * 221.26429 * 4 3 2 6 6 O 1.42895 * 114.17317 * 272.40481 * 5 4 3 7 7 C 1.50700 * 114.16583 * 139.69853 * 5 4 3 8 8 H 1.08000 * 120.00554 * 0.02562 * 7 5 4 9 9 C 1.37879 * 119.99684 * 180.02562 * 7 5 4 10 10 N 1.31523 * 120.00166 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 120.00152 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47429 * 89.99619 * 11 9 7 13 13 H 1.48505 * 109.47187 * 209.99833 * 11 9 7 14 14 H 1.48506 * 109.47181 * 329.99770 * 11 9 7 15 15 C 1.47486 * 111.00063 * 94.02802 * 3 2 1 16 16 H 1.08996 * 109.47195 * 60.00543 * 1 2 3 17 17 H 1.09005 * 109.46670 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.47503 * 299.99918 * 1 2 3 19 19 H 1.09002 * 109.47027 * 239.99932 * 2 1 3 20 20 H 1.09001 * 109.46958 * 120.00161 * 2 1 3 21 21 H 1.09002 * 113.47562 * 336.06376 * 4 3 2 22 22 H 1.09003 * 113.47677 * 106.46979 * 4 3 2 23 23 H 0.96692 * 114.00048 * 179.97438 * 6 5 4 24 24 H 0.96996 * 119.99713 * 180.02562 * 10 9 7 25 25 H 1.09001 * 113.47573 * 253.46865 * 15 3 2 26 26 H 1.08996 * 113.47515 * 23.87978 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4742 1.4313 -0.2391 5 6 3.5621 2.5218 0.8379 6 8 3.3626 3.8482 0.3452 7 6 4.7564 2.3951 1.7481 8 1 5.4586 1.5865 1.6084 9 6 4.9527 3.3116 2.7594 10 7 4.0979 4.2966 2.9292 11 14 6.4335 3.1551 3.8872 12 1 7.5741 3.9144 3.3150 13 1 6.0962 3.7025 5.2259 14 1 6.8074 1.7238 4.0176 15 6 2.2870 1.8510 1.3735 16 1 -0.3633 0.5137 -0.8900 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8900 19 1 1.8933 -0.5139 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 3.9886 0.5096 0.0331 22 1 3.7394 1.7833 -1.2361 23 1 3.4181 4.5330 1.0256 24 1 4.2363 4.9415 3.6404 25 1 1.5461 2.5597 1.7435 26 1 2.4836 1.0414 2.0762 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559780017.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -18.447037 kcal Electronic energy + Delta-G solvation = -10282.071502 eV Core-core repulsion = 8361.852847 eV Total energy + Delta-G solvation = -1920.218654 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.06268 -34.49809 -32.05830 -31.29199 -26.90465 -24.85352 -24.13932 -20.88529 -18.58799 -17.19778 -15.14482 -15.01627 -14.53192 -14.04210 -13.29507 -13.01130 -12.32184 -11.86478 -11.49412 -11.37936 -11.18969 -10.98941 -10.53441 -10.49565 -10.18581 -9.86897 -9.21973 -8.62335 -8.13763 -7.83810 -6.25479 -4.35221 3.20458 3.27578 3.30448 4.26029 4.91876 5.01327 5.43484 5.68313 5.80338 6.03859 6.09453 6.19851 6.23513 6.38167 6.50006 6.60537 6.74207 7.08582 7.24616 7.39154 7.78323 7.99139 8.09975 8.67046 9.34783 9.71554 10.80577 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.075237 B = 0.013690 C = 0.013147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.065636 B = 2044.759461 C = 2129.318265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 N -0.474 5.474 4 C 0.002 3.998 5 C 0.246 3.754 6 O -0.570 6.570 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.070 3.930 10 N -0.898 5.898 11 Si 0.905 3.095 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.273 1.273 15 C -0.021 4.021 16 H 0.057 0.943 17 H 0.047 0.953 18 H 0.051 0.949 19 H 0.060 0.940 20 H 0.037 0.963 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.390 0.610 24 H 0.271 0.729 25 H 0.067 0.933 26 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 -5.158 -1.268 5.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 N -0.197 5.197 4 C -0.126 4.126 5 C 0.204 3.796 6 O -0.382 6.382 7 C -0.573 4.573 8 H 0.084 0.916 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.732 3.268 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.197 1.197 15 C -0.151 4.151 16 H 0.076 0.924 17 H 0.066 0.934 18 H 0.070 0.930 19 H 0.078 0.922 20 H 0.055 0.945 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.245 0.755 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.749 -4.977 -2.157 6.081 hybrid contribution 1.217 -0.420 1.741 2.165 sum -1.533 -5.397 -0.417 5.625 Atomic orbital electron populations 1.21624 0.95543 1.00188 1.02195 1.22626 0.96347 0.92692 1.00115 1.68893 1.14891 1.16672 1.19218 1.24044 0.88615 0.98975 1.01013 1.19408 0.90432 0.81114 0.88629 1.86025 1.94498 1.16801 1.40904 1.21599 1.09621 1.12434 1.13611 0.91568 1.25080 0.96501 0.94658 0.96972 1.69304 1.36060 1.15201 1.33374 0.86385 0.82284 0.78526 0.79582 1.20280 1.20942 1.19742 1.24769 1.01326 0.99522 0.89463 0.92415 0.93362 0.92950 0.92161 0.94460 0.91969 0.91209 0.75481 0.91831 0.91493 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.24 37.16 0.38 -1.76 15 2 C 0.01 0.20 5.54 -3.83 -0.02 0.18 15 3 N -0.47 -10.48 6.33 -244.36 -1.55 -12.03 15 4 C 0.00 0.06 7.09 -7.54 -0.05 0.00 15 5 C 0.25 6.46 1.57 -91.14 -0.14 6.32 15 6 O -0.57 -15.96 13.54 -35.23 -0.48 -16.44 15 7 C -0.53 -14.55 8.69 -34.44 -0.30 -14.85 15 8 H 0.07 1.76 7.81 -52.49 -0.41 1.35 15 9 C 0.07 1.86 5.40 -17.82 -0.10 1.77 15 10 N -0.90 -24.48 11.02 55.43 0.61 -23.87 15 11 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 15 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 15 C -0.02 -0.52 7.14 -7.44 -0.05 -0.57 15 16 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 17 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 18 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.06 1.00 8.08 -51.93 -0.42 0.58 15 20 H 0.04 0.66 7.30 -51.93 -0.38 0.29 15 21 H 0.06 1.33 7.87 -51.93 -0.41 0.92 15 22 H 0.07 1.58 8.14 -51.93 -0.42 1.15 15 23 H 0.39 11.00 6.34 45.56 0.29 11.29 15 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 25 H 0.07 1.68 8.14 -51.93 -0.42 1.26 15 26 H 0.06 1.36 7.38 -51.93 -0.38 0.98 15 LS Contribution 221.20 15.07 3.33 3.33 Total: -1.00 -28.06 221.20 -6.35 -34.41 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.96 Total: 8.01 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.29 Total: -8.92 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.94 Total: -35.89 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.48 Total: -16.44 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -28.06 -6.35 -34.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559780017.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.960 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds