Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47059 * 2 1 4 4 C 1.47479 * 111.00130 * 190.00028 * 3 2 1 5 5 C 1.53517 * 87.99753 * 221.26429 * 4 3 2 6 6 O 1.42895 * 114.17317 * 272.40481 * 5 4 3 7 7 C 1.50700 * 114.16583 * 139.69853 * 5 4 3 8 8 H 1.08000 * 120.00554 * 0.02562 * 7 5 4 9 9 C 1.37879 * 119.99684 * 180.02562 * 7 5 4 10 10 N 1.31523 * 120.00166 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 120.00152 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47429 * 89.99619 * 11 9 7 13 13 H 1.48505 * 109.47187 * 209.99833 * 11 9 7 14 14 H 1.48506 * 109.47181 * 329.99770 * 11 9 7 15 15 C 1.47486 * 111.00063 * 94.02802 * 3 2 1 16 16 H 1.08996 * 109.47195 * 60.00543 * 1 2 3 17 17 H 1.09005 * 109.46670 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.47503 * 299.99918 * 1 2 3 19 19 H 1.09002 * 109.47027 * 239.99932 * 2 1 3 20 20 H 1.09001 * 109.46958 * 120.00161 * 2 1 3 21 21 H 1.09002 * 113.47562 * 336.06376 * 4 3 2 22 22 H 1.09003 * 113.47677 * 106.46979 * 4 3 2 23 23 H 0.96692 * 114.00048 * 179.97438 * 6 5 4 24 24 H 0.96996 * 119.99713 * 180.02562 * 10 9 7 25 25 H 1.09001 * 113.47573 * 253.46865 * 15 3 2 26 26 H 1.08996 * 113.47515 * 23.87978 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4742 1.4313 -0.2391 5 6 3.5621 2.5218 0.8379 6 8 3.3626 3.8482 0.3452 7 6 4.7564 2.3951 1.7481 8 1 5.4586 1.5865 1.6084 9 6 4.9527 3.3116 2.7594 10 7 4.0979 4.2966 2.9292 11 14 6.4335 3.1551 3.8872 12 1 7.5741 3.9144 3.3150 13 1 6.0962 3.7025 5.2259 14 1 6.8074 1.7238 4.0176 15 6 2.2870 1.8510 1.3735 16 1 -0.3633 0.5137 -0.8900 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8900 19 1 1.8933 -0.5139 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 3.9886 0.5096 0.0331 22 1 3.7394 1.7833 -1.2361 23 1 3.4181 4.5330 1.0256 24 1 4.2363 4.9415 3.6404 25 1 1.5461 2.5597 1.7435 26 1 2.4836 1.0414 2.0762 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559780017.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -40.702277 kcal Electronic energy + Delta-G solvation = -10283.036561 eV Core-core repulsion = 8361.852847 eV Total energy + Delta-G solvation = -1921.183714 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.89772 -36.44886 -34.12081 -32.86563 -28.79789 -26.71881 -25.91157 -22.46292 -20.52980 -19.21921 -17.15770 -16.82620 -16.19965 -15.83803 -15.06164 -14.69805 -14.05044 -13.63446 -13.38121 -13.05540 -12.86750 -12.63947 -12.27764 -12.23223 -12.06944 -11.57108 -11.12956 -10.63913 -10.09206 -9.66953 -8.26327 -6.44682 1.42768 1.44298 1.54755 2.36946 2.94397 3.25236 3.95713 4.02004 4.21425 4.37909 4.44640 4.58596 4.66394 4.85272 4.95549 5.00810 5.12548 5.30589 5.39373 5.54134 5.74152 5.95398 6.36306 6.61604 7.28617 7.54618 8.79195 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.075237 B = 0.013690 C = 0.013147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.065636 B = 2044.759461 C = 2129.318265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.481 5.481 4 C 0.011 3.989 5 C 0.216 3.784 6 O -0.584 6.584 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.024 3.976 10 N -0.921 5.921 11 Si 0.973 3.027 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.266 1.266 15 C -0.011 4.011 16 H 0.056 0.944 17 H 0.080 0.920 18 H 0.040 0.960 19 H 0.079 0.921 20 H 0.040 0.960 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.384 0.616 24 H 0.275 0.725 25 H 0.047 0.953 26 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 -6.389 -1.126 6.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.122 4.122 3 N -0.204 5.204 4 C -0.118 4.118 5 C 0.174 3.826 6 O -0.396 6.396 7 C -0.597 4.597 8 H 0.086 0.914 9 C -0.175 4.175 10 N -0.562 5.562 11 Si 0.797 3.203 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.191 1.191 15 C -0.140 4.140 16 H 0.075 0.925 17 H 0.099 0.901 18 H 0.059 0.941 19 H 0.098 0.902 20 H 0.059 0.941 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.238 0.762 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.508 -6.223 -2.031 7.009 hybrid contribution 1.099 -0.048 1.658 1.990 sum -1.408 -6.270 -0.372 6.437 Atomic orbital electron populations 1.21601 0.93630 1.02183 1.01609 1.22772 0.97965 0.90283 1.01192 1.68826 1.14349 1.19781 1.17444 1.23971 0.89472 0.98358 0.99976 1.19813 0.91294 0.80943 0.90508 1.86005 1.94698 1.17733 1.41122 1.21864 1.10346 1.13044 1.14455 0.91443 1.25884 0.99153 0.94212 0.98272 1.69383 1.37393 1.15635 1.33830 0.85336 0.78707 0.78694 0.77564 1.19952 1.20434 1.19069 1.24541 0.99771 0.99108 0.90602 0.92501 0.90093 0.94055 0.90227 0.94128 0.90373 0.91197 0.76175 0.91511 0.93398 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 10.24 71.98 0.74 -3.04 15 2 C 0.01 0.21 5.54 86.31 0.48 0.69 15 3 N -0.48 -20.69 6.33 -927.35 -5.87 -26.57 15 4 C 0.01 0.50 7.09 83.58 0.59 1.09 15 5 C 0.22 11.33 1.57 -11.13 -0.02 11.32 15 6 O -0.58 -33.19 13.54 -148.98 -2.02 -35.21 15 7 C -0.56 -30.32 8.69 25.60 0.22 -30.10 15 8 H 0.07 3.53 7.81 -2.91 -0.02 3.51 15 9 C 0.02 1.29 5.40 84.65 0.46 1.74 15 10 N -0.92 -50.40 11.02 21.45 0.24 -50.16 15 11 Si 0.97 41.58 29.54 68.60 2.03 43.61 15 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 13 H -0.28 -11.62 7.11 99.48 0.71 -10.92 15 14 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 15 C -0.01 -0.51 7.14 83.64 0.60 0.09 15 16 H 0.06 1.62 8.14 -2.39 -0.02 1.60 15 17 H 0.08 1.78 8.14 -2.38 -0.02 1.76 15 18 H 0.04 1.25 8.14 -2.39 -0.02 1.23 15 19 H 0.08 2.38 8.08 -2.39 -0.02 2.36 15 20 H 0.04 1.35 7.30 -2.39 -0.02 1.33 15 21 H 0.08 3.20 7.87 -2.39 -0.02 3.19 15 22 H 0.07 3.09 8.14 -2.39 -0.02 3.07 15 23 H 0.38 22.20 6.34 -74.06 -0.47 21.73 15 24 H 0.28 14.11 8.31 -92.71 -0.77 13.34 15 25 H 0.05 2.44 8.14 -2.39 -0.02 2.42 15 26 H 0.06 2.83 7.38 -2.39 -0.02 2.81 15 Total: -1.00 -58.35 221.20 -1.87 -60.22 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.69 Total: 26.31 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 3.07 Total: -18.21 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -5.64 Total: -76.73 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -2.02 Total: -35.21 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -58.35 -1.87 -60.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559780017.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.518 kcal (2) G-P(sol) polarization free energy of solvation -58.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds