Wall clock time and date at job start Mon Mar 30 2020 02:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86800 * 119.99477 * 2 1 4 4 H 1.48498 * 109.47069 * 239.99598 * 3 2 1 5 5 H 1.48502 * 109.47496 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46948 * 119.99741 * 3 2 1 7 7 C 1.40233 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.39998 * 119.99669 * 0.02562 * 7 2 1 10 10 N 1.32977 * 125.96476 * 0.02562 * 9 7 2 11 11 C 1.32764 * 109.22479 * 179.97438 * 10 9 7 12 12 C 1.36218 * 108.61935 * 0.02562 * 11 10 9 13 13 N 1.36416 * 107.19265 * 359.97438 * 12 11 10 14 14 C 1.46498 * 126.55368 * 180.02562 * 13 12 11 15 15 C 1.53002 * 117.50153 * 8.59656 * 14 13 12 16 16 C 1.52993 * 59.99955 * 252.51196 * 15 14 13 17 17 H 0.96999 * 120.00787 * 0.02562 * 1 2 3 18 18 H 1.07998 * 125.68783 * 179.97438 * 11 10 9 19 19 H 1.07999 * 126.40027 * 180.02562 * 12 11 10 20 20 H 1.09000 * 115.55282 * 154.30842 * 14 13 12 21 21 H 1.08996 * 117.49521 * 0.02562 * 15 14 13 22 22 H 1.09004 * 117.49820 * 145.01569 * 15 14 13 23 23 H 1.09005 * 117.49707 * 252.50740 * 16 15 14 24 24 H 1.09000 * 117.50436 * 107.49202 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6965 -1.2124 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6966 1.2126 7 6 2.0081 -1.2144 0.0005 8 1 3.0881 -1.2144 0.0010 9 6 1.3082 -2.4268 0.0005 10 7 -0.0144 -2.5651 -0.0004 11 6 -0.3188 -3.8573 -0.0006 12 6 0.8379 -4.5767 0.0008 13 7 1.8685 -3.6830 0.0013 14 6 3.2987 -4.0005 0.0023 15 6 3.6977 -5.4636 -0.2001 16 6 3.8407 -4.8154 1.1783 17 1 -0.4851 0.8400 -0.0004 18 1 -1.3171 -4.2694 -0.0010 19 1 0.9230 -5.6533 0.0006 20 1 3.9500 -3.2373 -0.4238 21 1 2.8962 -6.1899 -0.3344 22 1 4.6116 -5.6633 -0.7597 23 1 4.8486 -4.5886 1.5257 24 1 3.1332 -5.1152 1.9514 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017998419.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:28 Heat of formation + Delta-G solvation = 63.962668 kcal Electronic energy + Delta-G solvation = -10203.070575 eV Core-core repulsion = 8310.540953 eV Total energy + Delta-G solvation = -1892.529623 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.84674 -37.82546 -35.25507 -32.03732 -30.59366 -26.91959 -23.85645 -23.36092 -21.84182 -20.48139 -18.88308 -17.63302 -16.48065 -16.00181 -15.09123 -14.96575 -14.44667 -14.08905 -13.29841 -13.02416 -12.84313 -12.45007 -12.36600 -11.97279 -11.87855 -11.47009 -11.06959 -9.79413 -9.65880 -9.04458 -8.32635 -6.29083 1.36685 1.43538 1.57525 1.76559 2.25806 2.53758 2.74785 2.93976 3.62337 3.75224 3.99728 4.10332 4.45529 4.64055 4.67857 4.87667 4.94020 5.16606 5.18904 5.37711 5.71070 6.18825 6.27896 6.67048 7.00543 7.39370 8.27628 8.63912 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.050050 B = 0.015332 C = 0.012123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.309011 B = 1825.758783 C = 2309.147336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.030 3.970 3 Si 0.996 3.004 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.089 0.911 9 C 0.339 3.661 10 N -0.565 5.565 11 C -0.059 4.059 12 C -0.152 4.152 13 N -0.480 5.480 14 C 0.045 3.955 15 C -0.156 4.156 16 C -0.177 4.177 17 H 0.276 0.724 18 H 0.153 0.847 19 H 0.172 0.828 20 H 0.128 0.872 21 H 0.096 0.904 22 H 0.133 0.867 23 H 0.127 0.873 24 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.581 -4.849 0.309 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.531 4.531 8 H 0.107 0.893 9 C 0.094 3.906 10 N -0.288 5.288 11 C -0.210 4.210 12 C -0.283 4.283 13 N -0.168 5.168 14 C -0.060 4.060 15 C -0.193 4.193 16 C -0.215 4.215 17 H 0.086 0.914 18 H 0.170 0.830 19 H 0.190 0.810 20 H 0.146 0.854 21 H 0.115 0.885 22 H 0.151 0.849 23 H 0.145 0.855 24 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.899 -4.204 0.304 8.953 hybrid contribution 0.319 -0.141 0.030 0.350 sum 8.218 -4.345 0.334 9.302 Atomic orbital electron populations 1.70158 1.09063 1.28953 1.33960 1.26812 0.95603 1.04164 0.92310 0.85079 0.78248 0.75065 0.80025 1.18107 1.19772 1.18160 1.18523 0.94107 0.88357 1.52155 0.89342 1.20643 0.87781 0.85155 0.96993 1.71171 1.11603 1.16739 1.29249 1.22599 0.97864 0.91616 1.08955 1.22284 0.87778 0.95603 1.22629 1.45086 1.04795 1.06274 1.60634 1.21864 0.80893 0.96928 1.06312 1.23388 1.04091 0.92598 0.99268 1.23419 1.03177 1.03053 0.91834 0.91399 0.82986 0.81045 0.85423 0.88527 0.84890 0.85481 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.14 11.90 21.88 0.26 -46.88 14 2 C 0.03 1.63 5.50 85.35 0.47 2.10 14 3 Si 1.00 40.25 29.56 68.60 2.03 42.28 14 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 14 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 14 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 14 7 C -0.49 -28.03 9.06 23.18 0.21 -27.82 14 8 H 0.09 4.58 7.23 -2.91 -0.02 4.55 14 9 C 0.34 20.03 7.43 133.59 0.99 21.02 14 10 N -0.57 -35.22 9.41 -194.17 -1.83 -37.05 14 11 C -0.06 -3.16 11.85 84.08 1.00 -2.17 14 12 C -0.15 -7.16 10.90 83.51 0.91 -6.25 14 13 N -0.48 -23.64 3.14 -498.39 -1.57 -25.21 14 14 C 0.04 1.68 6.55 44.99 0.29 1.97 14 15 C -0.16 -4.19 9.99 30.59 0.31 -3.88 14 16 C -0.18 -5.14 10.40 30.59 0.32 -4.82 14 17 H 0.28 14.87 8.29 -92.71 -0.77 14.10 14 18 H 0.15 7.12 8.06 -2.91 -0.02 7.10 14 19 H 0.17 6.52 7.12 -2.91 -0.02 6.49 14 20 H 0.13 4.66 7.60 -2.39 -0.02 4.65 14 21 H 0.10 2.61 6.90 -2.39 -0.02 2.60 14 22 H 0.13 2.67 8.14 -2.39 -0.02 2.65 14 23 H 0.13 2.92 8.14 -2.38 -0.02 2.90 14 24 H 0.08 2.61 8.14 -2.39 -0.02 2.59 14 Total: -1.00 -71.87 216.65 4.59 -67.28 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 1.19 Total: 19.43 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.50 Total: -19.85 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.13 Total: -109.14 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -71.87 4.59 -67.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017998419.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.244 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds