Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31327 * 1 3 3 Si 1.86793 * 120.00392 * 2 1 4 4 H 1.48502 * 109.47438 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47224 * 300.00532 * 3 2 1 6 6 H 1.48505 * 109.46918 * 59.99830 * 3 2 1 7 7 C 1.38947 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00017 * 152.85710 * 7 2 1 9 9 N 1.37561 * 119.99853 * 332.84959 * 7 2 1 10 10 C 1.36267 * 126.51758 * 341.58019 * 9 7 2 11 11 N 1.30487 * 108.51515 * 179.82095 * 10 9 7 12 12 C 1.34249 * 109.39610 * 0.44673 * 11 10 9 13 13 C 1.34635 * 108.28271 * 359.71651 * 12 11 10 14 14 C 1.50696 * 126.58327 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49675 * 33.77882 * 14 13 12 16 16 C 1.52996 * 117.50143 * 325.11630 * 14 13 12 17 17 H 0.96999 * 119.99673 * 174.33294 * 1 2 3 18 18 H 1.08003 * 125.73868 * 359.97438 * 10 9 7 19 19 H 1.08004 * 125.85369 * 179.74174 * 12 11 10 20 20 H 1.09000 * 115.54920 * 179.44098 * 14 13 12 21 21 H 1.09002 * 117.50193 * 359.97438 * 15 14 13 22 22 H 1.09005 * 117.49913 * 145.01635 * 15 14 13 23 23 H 1.09000 * 117.49957 * 214.97017 * 16 14 13 24 24 H 1.08996 * 117.50215 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6176 0.0000 4 1 3.7074 1.3462 -0.0006 5 1 1.8886 2.3964 -1.2124 6 1 1.8886 2.3963 1.2125 7 6 2.0080 -1.2033 -0.0005 8 1 2.9988 -1.2547 -0.4273 9 7 1.4338 -2.3292 0.5426 10 6 0.3819 -2.3660 1.4080 11 7 0.1242 -3.6127 1.6942 12 6 0.9895 -4.4074 1.0446 13 6 1.8155 -3.6292 0.3202 14 6 2.9431 -4.0954 -0.5642 15 6 2.7609 -5.4250 -1.2991 16 6 3.7281 -5.3299 -0.1164 17 1 -0.4849 -0.8360 -0.0830 18 1 -0.1507 -1.5078 1.7905 19 1 1.0178 -5.4859 1.0942 20 1 3.4940 -3.3077 -1.0781 21 1 1.8258 -5.9626 -1.1426 22 1 3.1925 -5.5121 -2.2963 23 1 4.7954 -5.3546 -0.3360 24 1 3.4293 -5.8047 0.8182 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018002081.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = 70.605736 kcal Electronic energy + Delta-G solvation = -10243.899297 eV Core-core repulsion = 8351.657740 eV Total energy + Delta-G solvation = -1892.241558 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64956 -36.41235 -34.18896 -30.89637 -27.73594 -25.02121 -22.39928 -21.91893 -20.31222 -19.31093 -17.77708 -15.71112 -14.75292 -14.17194 -13.85538 -13.59993 -12.91914 -12.52494 -11.95227 -11.20520 -11.16562 -11.10564 -10.46327 -10.40368 -10.18623 -9.96768 -9.48020 -8.71036 -8.48214 -7.28470 -6.90787 -4.53307 2.98423 3.12276 3.30431 3.42079 3.90261 4.25417 4.58706 4.66281 4.84136 5.38061 5.56370 5.63180 6.00039 6.02072 6.05282 6.34063 6.53408 6.54172 6.69335 6.98446 7.27764 7.69556 7.93619 8.14004 8.68302 9.21847 9.53719 10.08139 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.051351 B = 0.015019 C = 0.012416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.138090 B = 1863.891268 C = 2254.626134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.028 3.972 3 Si 1.087 2.913 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.433 4.433 8 H 0.103 0.897 9 N -0.256 5.256 10 C 0.095 3.905 11 N -0.521 5.521 12 C -0.061 4.061 13 C -0.060 4.060 14 C -0.051 4.051 15 C -0.176 4.176 16 C -0.178 4.178 17 H 0.292 0.708 18 H 0.186 0.814 19 H 0.142 0.858 20 H 0.102 0.898 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 -2.674 -2.008 6.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.187 4.187 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.121 0.879 9 N 0.080 4.920 10 C -0.181 4.181 11 N -0.240 5.240 12 C -0.216 4.216 13 C -0.182 4.182 14 C -0.070 4.070 15 C -0.214 4.214 16 C -0.216 4.216 17 H 0.105 0.895 18 H 0.203 0.797 19 H 0.159 0.841 20 H 0.120 0.880 21 H 0.112 0.888 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.982 -1.079 -1.458 5.302 hybrid contribution 0.762 -1.369 -0.685 1.710 sum 5.744 -2.448 -2.143 6.602 Atomic orbital electron populations 1.70599 1.07473 1.33239 1.34806 1.26825 0.95891 1.03111 0.92842 0.83278 0.74831 0.72848 0.78059 1.20303 1.20432 1.19898 1.20808 1.03619 0.87211 1.44561 0.87886 1.41643 1.20346 1.04628 1.25350 1.24490 0.96933 0.96102 1.00617 1.69984 1.26666 1.00860 1.26539 1.21315 0.98025 0.97859 1.04375 1.19877 1.04257 0.84790 1.09252 1.19856 0.96814 0.90649 0.99716 1.22973 1.01259 1.01214 0.95965 1.22992 0.96763 1.02826 0.99022 0.89523 0.79717 0.84061 0.88005 0.88804 0.89287 0.89319 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.60 12.56 55.49 0.70 -21.90 14 2 C 0.03 0.72 5.15 -17.51 -0.09 0.63 14 3 Si 1.09 21.77 30.00 -169.99 -5.10 16.67 14 4 H -0.28 -5.26 7.11 56.52 0.40 -4.86 14 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 14 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 14 7 C -0.43 -11.51 9.69 -14.72 -0.14 -11.65 14 8 H 0.10 2.63 7.33 -52.49 -0.38 2.25 14 9 N -0.26 -6.92 2.84 -58.93 -0.17 -7.09 14 10 C 0.10 2.60 10.40 -89.26 -0.93 1.67 14 11 N -0.52 -13.94 11.25 -14.35 -0.16 -14.10 14 12 C -0.06 -1.49 10.92 -17.77 -0.19 -1.68 14 13 C -0.06 -1.47 6.60 -81.42 -0.54 -2.00 14 14 C -0.05 -1.02 6.05 -91.78 -0.55 -1.58 14 15 C -0.18 -2.88 10.06 -26.69 -0.27 -3.15 14 16 C -0.18 -2.88 10.06 -26.69 -0.27 -3.15 14 17 H 0.29 8.23 6.66 -40.82 -0.27 7.96 14 18 H 0.19 4.97 6.89 -52.48 -0.36 4.61 14 19 H 0.14 3.01 8.06 -52.48 -0.42 2.59 14 20 H 0.10 2.07 7.42 -51.93 -0.39 1.68 14 21 H 0.09 1.54 7.95 -51.93 -0.41 1.13 14 22 H 0.09 1.26 8.14 -51.93 -0.42 0.83 14 23 H 0.09 1.23 8.14 -51.93 -0.42 0.81 14 24 H 0.09 1.52 7.97 -51.93 -0.41 1.10 14 LS Contribution 215.45 15.07 3.25 3.25 Total: -1.00 -29.26 215.45 -6.76 -36.02 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -2.29 Total: 8.08 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -2.98 Total: -20.93 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.37 Total: -43.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.10 Total: 16.67 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.26 -6.76 -36.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018002081.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.629 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds