Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31327 * 1 3 3 Si 1.86793 * 120.00392 * 2 1 4 4 H 1.48502 * 109.47438 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47224 * 300.00532 * 3 2 1 6 6 H 1.48505 * 109.46918 * 59.99830 * 3 2 1 7 7 C 1.38947 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00017 * 152.85710 * 7 2 1 9 9 N 1.37561 * 119.99853 * 332.84959 * 7 2 1 10 10 C 1.36267 * 126.51758 * 341.58019 * 9 7 2 11 11 N 1.30487 * 108.51515 * 179.82095 * 10 9 7 12 12 C 1.34249 * 109.39610 * 0.44673 * 11 10 9 13 13 C 1.34635 * 108.28271 * 359.71651 * 12 11 10 14 14 C 1.50696 * 126.58327 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49675 * 33.77882 * 14 13 12 16 16 C 1.52996 * 117.50143 * 325.11630 * 14 13 12 17 17 H 0.96999 * 119.99673 * 174.33294 * 1 2 3 18 18 H 1.08003 * 125.73868 * 359.97438 * 10 9 7 19 19 H 1.08004 * 125.85369 * 179.74174 * 12 11 10 20 20 H 1.09000 * 115.54920 * 179.44098 * 14 13 12 21 21 H 1.09002 * 117.50193 * 359.97438 * 15 14 13 22 22 H 1.09005 * 117.49913 * 145.01635 * 15 14 13 23 23 H 1.09000 * 117.49957 * 214.97017 * 16 14 13 24 24 H 1.08996 * 117.50215 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6176 0.0000 4 1 3.7074 1.3462 -0.0006 5 1 1.8886 2.3964 -1.2124 6 1 1.8886 2.3963 1.2125 7 6 2.0080 -1.2033 -0.0005 8 1 2.9988 -1.2547 -0.4273 9 7 1.4338 -2.3292 0.5426 10 6 0.3819 -2.3660 1.4080 11 7 0.1242 -3.6127 1.6942 12 6 0.9895 -4.4074 1.0446 13 6 1.8155 -3.6292 0.3202 14 6 2.9431 -4.0954 -0.5642 15 6 2.7609 -5.4250 -1.2991 16 6 3.7281 -5.3299 -0.1164 17 1 -0.4849 -0.8360 -0.0830 18 1 -0.1507 -1.5078 1.7905 19 1 1.0178 -5.4859 1.0942 20 1 3.4940 -3.3077 -1.0781 21 1 1.8258 -5.9626 -1.1426 22 1 3.1925 -5.5121 -2.2963 23 1 4.7954 -5.3546 -0.3360 24 1 3.4293 -5.8047 0.8182 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018002081.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = 54.253238 kcal Electronic energy + Delta-G solvation = -10244.608395 eV Core-core repulsion = 8351.657740 eV Total energy + Delta-G solvation = -1892.950655 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.62105 -37.86528 -36.17428 -32.90627 -29.63026 -27.04546 -24.06742 -23.18751 -22.32999 -21.24066 -19.61385 -17.57538 -16.39845 -15.89736 -15.70116 -15.21000 -14.69605 -14.47306 -13.92001 -12.92680 -12.81392 -12.35410 -12.20329 -11.93301 -11.70598 -11.40611 -11.32120 -10.73023 -10.49471 -9.32315 -8.82031 -6.60914 1.20091 1.49330 1.73328 1.78696 2.20952 2.34208 2.68474 2.90035 3.20631 3.90946 4.01971 4.10108 4.28975 4.46028 4.66617 4.78141 4.86169 5.02637 5.10943 5.30317 5.37841 5.62557 5.93104 6.19501 6.69213 7.18729 7.52269 8.01577 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.051351 B = 0.015019 C = 0.012416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.138090 B = 1863.891268 C = 2254.626134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C -0.007 4.007 3 Si 1.140 2.860 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.457 4.457 8 H 0.109 0.891 9 N -0.273 5.273 10 C 0.070 3.930 11 N -0.537 5.537 12 C -0.072 4.072 13 C -0.061 4.061 14 C -0.096 4.096 15 C -0.155 4.155 16 C -0.151 4.151 17 H 0.274 0.726 18 H 0.177 0.823 19 H 0.173 0.827 20 H 0.094 0.906 21 H 0.092 0.908 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -3.254 -2.708 8.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.216 4.216 3 Si 0.955 3.045 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.126 0.874 9 N 0.061 4.939 10 C -0.206 4.206 11 N -0.258 5.258 12 C -0.225 4.225 13 C -0.183 4.183 14 C -0.116 4.116 15 C -0.192 4.192 16 C -0.188 4.188 17 H 0.085 0.915 18 H 0.194 0.806 19 H 0.190 0.810 20 H 0.112 0.888 21 H 0.111 0.889 22 H 0.135 0.865 23 H 0.137 0.863 24 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.750 -1.695 -2.159 7.287 hybrid contribution 0.216 -1.317 -0.482 1.419 sum 6.967 -3.011 -2.641 8.036 Atomic orbital electron populations 1.70722 1.08460 1.32037 1.36894 1.28484 0.95800 1.06360 0.90962 0.82667 0.74533 0.68700 0.78553 1.18267 1.19258 1.19362 1.21156 1.04086 0.87824 1.45451 0.87353 1.41896 1.20563 1.05770 1.25629 1.24410 0.97963 0.96252 1.01945 1.69952 1.27576 1.00954 1.27324 1.21856 0.97522 0.99202 1.03963 1.20737 1.04842 0.83903 1.08783 1.19987 0.97328 0.92418 1.01858 1.23091 1.01511 0.97129 0.97504 1.23101 0.98249 0.98465 0.99035 0.91473 0.80642 0.81000 0.88757 0.88902 0.86504 0.86345 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.30 12.56 21.66 0.27 -47.02 14 2 C -0.01 -0.37 5.15 84.94 0.44 0.07 14 3 Si 1.14 43.02 30.00 68.60 2.06 45.08 14 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 14 5 H -0.27 -9.60 7.11 99.48 0.71 -8.89 14 6 H -0.27 -9.89 7.11 99.48 0.71 -9.18 14 7 C -0.46 -24.52 9.69 83.96 0.81 -23.71 14 8 H 0.11 5.54 7.33 -2.91 -0.02 5.52 14 9 N -0.27 -15.04 2.84 -340.37 -0.97 -16.01 14 10 C 0.07 3.95 10.40 179.87 1.87 5.82 14 11 N -0.54 -29.14 11.25 -199.32 -2.24 -31.38 14 12 C -0.07 -3.47 10.92 83.50 0.91 -2.56 14 13 C -0.06 -2.96 6.60 40.88 0.27 -2.69 14 14 C -0.10 -3.71 6.05 -11.54 -0.07 -3.78 14 15 C -0.15 -4.52 10.06 30.62 0.31 -4.22 14 16 C -0.15 -4.33 10.06 30.62 0.31 -4.02 14 17 H 0.27 16.06 6.66 -92.71 -0.62 15.44 14 18 H 0.18 9.93 6.89 -2.91 -0.02 9.91 14 19 H 0.17 6.99 8.06 -2.91 -0.02 6.96 14 20 H 0.09 3.72 7.42 -2.39 -0.02 3.71 14 21 H 0.09 2.75 7.95 -2.39 -0.02 2.73 14 22 H 0.12 2.78 8.14 -2.38 -0.02 2.76 14 23 H 0.12 2.72 8.14 -2.39 -0.02 2.70 14 24 H 0.09 2.72 7.97 -2.39 -0.02 2.70 14 Total: -1.00 -63.53 215.45 5.31 -58.21 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.34 Total: 26.19 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 4.85 Total: -35.08 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -2.94 Total: -94.41 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.06 Total: 45.08 kcal Total: -63.53 5.31 -58.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018002081.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.468 kcal (2) G-P(sol) polarization free energy of solvation -63.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds