Wall clock time and date at job start Mon Mar 30 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48503 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47299 * 300.00014 * 3 2 1 6 6 H 1.48495 * 109.47075 * 60.00174 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.38650 * 120.78792 * 269.71459 * 11 10 9 13 13 C 1.38207 * 119.16129 * 179.79528 * 12 11 10 14 14 N 1.31868 * 120.76474 * 0.49389 * 13 12 11 15 15 C 1.31874 * 121.72157 * 359.73831 * 14 13 12 16 16 C 1.38199 * 120.77057 * 0.02562 * 15 14 13 17 17 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 18 18 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 19 19 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 20 20 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 21 21 H 1.07998 * 120.42060 * 0.02562 * 12 11 10 22 22 H 1.07997 * 119.61581 * 180.20726 * 13 12 11 23 23 H 1.07998 * 119.61429 * 180.02562 * 15 14 13 24 24 H 1.07991 * 120.42226 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0789 -4.8022 -0.0022 12 6 0.6218 -5.3458 1.1886 13 6 -0.2793 -6.3929 1.1488 14 7 -0.6961 -6.8807 -0.0033 15 6 -0.2791 -6.3917 -1.1549 16 6 0.6182 -5.3414 -1.1936 17 1 -0.4851 0.8400 0.0004 18 1 0.3556 -2.3881 -0.0016 19 1 2.6855 -3.7140 -0.8911 20 1 2.6842 -3.7148 0.8888 21 1 0.9627 -4.9534 2.1352 22 1 -0.6427 -6.8196 2.0719 23 1 -0.6431 -6.8171 -2.0784 24 1 0.9563 -4.9457 -2.1398 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019230903.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:19 Heat of formation + Delta-G solvation = 42.111255 kcal Electronic energy + Delta-G solvation = -9780.758217 eV Core-core repulsion = 7887.281045 eV Total energy + Delta-G solvation = -1893.477171 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.76941 -35.13380 -32.59507 -30.88228 -30.25129 -26.00882 -23.10873 -23.06719 -21.16143 -17.40002 -16.09006 -15.96290 -15.23580 -14.67239 -13.69094 -13.44437 -13.33420 -13.03253 -12.45529 -11.61855 -11.21945 -10.97426 -10.85579 -10.13103 -9.89438 -9.20288 -9.18081 -8.96864 -8.84039 -7.01443 -5.81916 -3.12796 1.45214 1.58848 3.40339 3.45726 3.48294 4.12172 4.56972 4.71704 5.10898 5.18003 5.46584 5.49679 5.52737 5.92660 6.00930 6.08270 6.30822 6.36207 6.49099 6.91463 7.02749 7.64244 8.23093 8.35096 9.46923 10.01099 10.36877 11.40530 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.090533 B = 0.009086 C = 0.009039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.204885 B = 3081.071302 C = 3096.901624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.185 3.815 11 C -0.034 4.034 12 C -0.158 4.158 13 C 0.089 3.911 14 N -0.496 5.496 15 C 0.089 3.911 16 C -0.158 4.158 17 H 0.256 0.744 18 H 0.386 0.614 19 H 0.032 0.968 20 H 0.032 0.968 21 H 0.133 0.867 22 H 0.151 0.849 23 H 0.151 0.849 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -10.032 -0.004 10.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.058 3.942 11 C -0.043 4.043 12 C -0.179 4.179 13 C -0.068 4.068 14 N -0.205 5.205 15 C -0.068 4.068 16 C -0.178 4.178 17 H 0.066 0.934 18 H 0.219 0.781 19 H 0.050 0.950 20 H 0.050 0.950 21 H 0.151 0.849 22 H 0.168 0.832 23 H 0.168 0.832 24 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.177 -10.594 -0.005 10.659 hybrid contribution 0.685 1.721 0.001 1.852 sum 1.862 -8.874 -0.004 9.067 Atomic orbital electron populations 1.69685 1.05178 1.25724 1.57297 1.24781 0.95558 0.97810 1.02668 0.86076 0.78764 0.83835 0.77244 1.20456 1.21765 1.21760 1.19281 0.91133 0.83817 1.43298 0.90890 1.42313 1.05931 0.99221 1.89641 1.19712 0.91694 0.83674 0.99145 1.20753 0.95620 0.95152 0.92742 1.22115 0.98953 0.97579 0.99216 1.22659 0.94244 0.93837 0.96030 1.67605 1.24621 1.29688 0.98632 1.22659 0.94269 0.93812 0.96039 1.22112 0.98952 0.97569 0.99217 0.93425 0.78066 0.94985 0.95000 0.84867 0.83184 0.83185 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 14 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 14 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 14 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 14 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 14 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 14 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 14 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 14 9 N -0.73 -18.62 5.59 -61.08 -0.34 -18.96 14 10 C 0.18 3.76 6.43 -5.19 -0.03 3.73 14 11 C -0.03 -0.61 5.29 -104.32 -0.55 -1.16 14 12 C -0.16 -2.56 9.82 -39.44 -0.39 -2.94 14 13 C 0.09 1.34 11.18 -17.55 -0.20 1.14 14 14 N -0.50 -7.98 10.36 -13.25 -0.14 -8.11 14 15 C 0.09 1.33 11.18 -17.55 -0.20 1.14 14 16 C -0.16 -2.56 9.82 -39.44 -0.39 -2.94 14 17 H 0.26 7.49 8.31 -40.82 -0.34 7.15 14 18 H 0.39 10.58 7.66 -40.82 -0.31 10.27 14 19 H 0.03 0.64 8.10 -51.93 -0.42 0.22 14 20 H 0.03 0.64 8.10 -51.93 -0.42 0.22 14 21 H 0.13 1.98 8.06 -52.49 -0.42 1.56 14 22 H 0.15 1.78 8.06 -52.49 -0.42 1.35 14 23 H 0.15 1.78 8.06 -52.49 -0.42 1.35 14 24 H 0.13 1.99 8.06 -52.49 -0.42 1.56 14 LS Contribution 221.33 15.07 3.34 3.34 Total: -1.00 -31.15 221.33 -5.83 -36.98 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -2.39 Total: 5.56 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.00 Total: -8.47 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.25 Total: -54.67 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.15 -5.83 -36.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019230903.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.090 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds