Wall clock time and date at job start Mon Mar 30 2020 02:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99874 * 2 1 4 4 H 1.48504 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47368 * 300.00428 * 3 2 1 6 6 H 1.48503 * 109.47191 * 60.00246 * 3 2 1 7 7 C 1.38804 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00433 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00371 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47313 * 180.02562 * 10 9 7 12 12 C 1.38678 * 120.41675 * 270.25293 * 11 10 9 13 13 C 1.38627 * 118.41930 * 180.24221 * 12 11 10 14 14 C 1.38232 * 119.16085 * 359.75178 * 13 12 11 15 15 N 1.31857 * 120.76541 * 359.97438 * 14 13 12 16 16 C 1.31889 * 121.72235 * 0.02562 * 15 14 13 17 17 H 0.96999 * 119.99600 * 359.97438 * 1 2 3 18 18 H 0.97000 * 119.99918 * 0.02562 * 9 7 2 19 19 H 1.09001 * 109.46632 * 59.99929 * 10 9 7 20 20 H 1.08996 * 109.46728 * 299.99923 * 10 9 7 21 21 H 1.07994 * 120.78944 * 359.96926 * 12 11 10 22 22 H 1.07997 * 120.42083 * 179.72800 * 13 12 11 23 23 H 1.07999 * 119.61954 * 180.02562 * 14 13 12 24 24 H 1.08002 * 119.61237 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 0.6181 -5.3327 1.1944 13 6 -0.2781 -6.3892 1.1456 14 6 -0.6838 -6.8720 -0.0846 15 7 -0.2289 -6.3391 -1.2016 16 6 0.6243 -5.3334 -1.1931 17 1 -0.4849 0.8401 0.0004 18 1 0.3556 -2.3881 -0.0005 19 1 2.6847 -3.7145 0.8895 20 1 2.6847 -3.7145 -0.8905 21 1 0.9530 -4.9352 2.1411 22 1 -0.6542 -6.8298 2.0570 23 1 -1.3820 -7.6945 -0.1313 24 1 0.9751 -4.9233 -2.1285 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020564010.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:03 Heat of formation + Delta-G solvation = 21.104780 kcal Electronic energy + Delta-G solvation = -9787.958455 eV Core-core repulsion = 7893.570375 eV Total energy + Delta-G solvation = -1894.388080 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.02303 -36.81135 -34.17145 -32.91925 -31.59386 -27.48492 -24.89256 -24.42913 -22.58368 -19.35308 -17.94085 -17.24203 -16.75505 -16.11949 -15.34220 -15.03430 -14.52965 -14.12090 -13.95173 -13.76269 -13.09153 -12.81868 -12.33079 -12.05135 -11.88176 -11.03482 -10.71452 -10.37784 -9.93594 -9.06009 -7.97477 -5.28386 0.19685 0.37339 1.47863 1.48886 1.59287 2.54473 2.90247 3.36234 3.57742 3.94809 4.01597 4.14112 4.17943 4.21668 4.62192 4.81953 4.92687 4.95972 5.21929 5.47288 5.48255 5.82670 6.23034 7.03841 7.29752 8.01203 8.26388 9.26152 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.090693 B = 0.009129 C = 0.009083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.658983 B = 3066.272205 C = 3081.925599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.741 5.741 10 C 0.193 3.807 11 C -0.147 4.147 12 C -0.072 4.072 13 C -0.166 4.166 14 C 0.084 3.916 15 N -0.511 5.511 16 C 0.096 3.904 17 H 0.252 0.748 18 H 0.372 0.628 19 H 0.038 0.962 20 H 0.035 0.965 21 H 0.141 0.859 22 H 0.170 0.830 23 H 0.187 0.813 24 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 -11.840 2.464 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.383 5.383 10 C 0.067 3.933 11 C -0.149 4.149 12 C -0.099 4.099 13 C -0.185 4.185 14 C -0.073 4.073 15 N -0.219 5.219 16 C -0.061 4.061 17 H 0.060 0.940 18 H 0.203 0.797 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.159 0.841 22 H 0.187 0.813 23 H 0.204 0.796 24 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.110 -12.082 1.655 12.245 hybrid contribution 0.231 1.472 0.699 1.646 sum 1.341 -10.610 2.354 10.950 Atomic orbital electron populations 1.69850 1.06806 1.26134 1.59344 1.25642 0.96422 1.01337 1.03422 0.85004 0.78292 0.79362 0.76651 1.18730 1.22065 1.21940 1.19726 0.91726 0.84980 1.41468 0.90076 1.42566 1.05504 1.00688 1.89556 1.19657 0.92011 0.82485 0.99192 1.21107 1.00411 0.98303 0.95090 1.21805 0.95083 0.94735 0.98234 1.22482 0.98058 0.97141 1.00824 1.23363 0.97475 0.98884 0.87563 1.67706 1.10832 1.10453 1.32955 1.22711 0.93233 0.92214 0.97904 0.93954 0.79650 0.94458 0.94668 0.84075 0.81266 0.79602 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.21 13.06 21.65 0.28 -59.93 14 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 14 3 Si 0.98 46.13 29.55 68.60 2.03 48.16 14 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 14 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 14 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 14 7 C -0.25 -13.89 9.99 84.03 0.84 -13.05 14 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 14 9 N -0.74 -38.35 5.59 -347.19 -1.94 -40.29 14 10 C 0.19 7.85 6.41 85.63 0.55 8.40 14 11 C -0.15 -5.19 5.27 -19.77 -0.10 -5.29 14 12 C -0.07 -2.16 9.86 22.47 0.22 -1.94 14 13 C -0.17 -3.97 10.11 22.36 0.23 -3.75 14 14 C 0.08 2.15 11.18 84.69 0.95 3.09 14 15 N -0.51 -16.53 10.36 -195.83 -2.03 -18.56 14 16 C 0.10 3.32 10.86 84.67 0.92 4.24 14 17 H 0.25 15.05 8.31 -92.71 -0.77 14.28 14 18 H 0.37 20.89 7.66 -92.71 -0.71 20.18 14 19 H 0.04 1.46 8.10 -2.39 -0.02 1.44 14 20 H 0.04 1.40 8.09 -2.39 -0.02 1.38 14 21 H 0.14 3.91 8.06 -2.91 -0.02 3.88 14 22 H 0.17 2.69 8.06 -2.91 -0.02 2.66 14 23 H 0.19 3.23 8.06 -2.91 -0.02 3.20 14 24 H 0.15 5.09 8.06 -2.91 -0.02 5.07 14 Total: -1.00 -66.36 221.29 2.89 -63.47 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.48 Total: 19.38 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.07 Total: -12.23 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -3.69 Total: -118.79 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -66.36 2.89 -63.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020564010.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.578 kcal (2) G-P(sol) polarization free energy of solvation -66.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds