Wall clock time and date at job start Mon Mar 30 2020 02:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86804 * 119.99612 * 2 1 4 4 H 1.48499 * 109.46953 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47044 * 119.99322 * 3 2 1 6 6 H 1.48496 * 109.46921 * 239.99444 * 3 2 1 7 7 C 1.39947 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99794 * 206.12696 * 7 2 1 9 9 C 1.41390 * 119.99674 * 26.12441 * 7 2 1 10 10 C 1.40731 * 120.24435 * 25.73030 * 9 7 2 11 11 C 1.37602 * 119.74650 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24774 * 0.02562 * 11 10 9 13 13 C 1.38616 * 120.50053 * 0.02562 * 12 11 10 14 14 C 1.37649 * 120.24717 * 359.66953 * 13 12 11 15 15 C 1.50695 * 120.12912 * 180.32267 * 14 13 12 16 16 O 1.42906 * 109.47184 * 0.30323 * 15 14 13 17 17 H 0.97004 * 119.99443 * 185.88541 * 1 2 3 18 18 H 1.08003 * 120.13198 * 359.97438 * 10 9 7 19 19 H 1.07997 * 119.88057 * 179.97438 * 11 10 9 20 20 H 1.07995 * 119.75351 * 179.97438 * 12 11 10 21 21 H 1.07996 * 119.87709 * 179.97438 * 13 12 11 22 22 H 1.08992 * 109.47372 * 120.30360 * 15 14 13 23 23 H 1.09006 * 109.47254 * 240.30570 * 15 14 13 24 24 H 0.96694 * 113.99929 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7464 -0.0006 5 1 3.0958 1.6966 1.2126 6 1 3.0960 1.6964 -1.2124 7 6 2.0081 -1.2119 0.0005 8 1 3.0053 -1.2594 0.4124 9 6 1.4095 -2.3741 -0.5381 10 6 0.4106 -2.2653 -1.5235 11 6 -0.1654 -3.4031 -2.0403 12 6 0.2345 -4.6533 -1.5933 13 6 1.2166 -4.7723 -0.6225 14 6 1.8110 -3.6480 -0.0959 15 6 2.8836 -3.7808 0.9542 16 8 3.1116 -5.1643 1.2301 17 1 -0.4849 -0.8357 0.0861 18 1 0.0967 -1.2925 -1.8722 19 1 -0.9325 -3.3221 -2.7962 20 1 -0.2233 -5.5410 -2.0041 21 1 1.5201 -5.7511 -0.2814 22 1 3.8054 -3.3260 0.5916 23 1 2.5638 -3.2764 1.8661 24 1 3.7911 -5.3253 1.8989 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032158012.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:14 Heat of formation + Delta-G solvation = -68.248055 kcal Electronic energy + Delta-G solvation = -10155.749321 eV Core-core repulsion = 8225.193861 eV Total energy + Delta-G solvation = -1930.555461 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.88426 -37.43890 -35.73568 -32.39859 -31.08008 -27.39989 -26.32066 -22.86591 -21.71254 -19.69436 -18.20182 -16.94730 -16.05336 -15.91161 -15.66223 -15.35431 -14.34642 -14.18077 -13.79096 -13.13521 -12.84792 -12.64352 -12.16163 -11.95049 -11.56532 -11.19885 -11.16285 -10.83930 -9.52398 -9.43413 -9.11629 -6.46310 0.86551 0.93552 1.51923 1.65493 1.80879 2.33968 2.67670 3.49475 3.50925 4.27037 4.41439 4.49009 4.56363 4.70122 4.91403 5.09208 5.25797 5.46148 5.73028 5.80105 5.92131 6.01160 6.23072 6.38820 6.78630 6.94472 6.99430 8.03486 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.044138 B = 0.016221 C = 0.012439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.222463 B = 1725.792914 C = 2250.474972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.004 3.996 3 Si 1.117 2.883 4 H -0.274 1.274 5 H -0.255 1.255 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.075 3.925 10 C -0.242 4.242 11 C -0.092 4.092 12 C -0.254 4.254 13 C -0.071 4.071 14 C -0.228 4.228 15 C 0.155 3.845 16 O -0.584 6.584 17 H 0.282 0.718 18 H 0.090 0.910 19 H 0.115 0.885 20 H 0.120 0.880 21 H 0.116 0.884 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -1.657 1.470 5.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.198 1.198 5 H -0.179 1.179 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.072 3.928 10 C -0.261 4.261 11 C -0.110 4.110 12 C -0.273 4.273 13 C -0.089 4.089 14 C -0.229 4.229 15 C 0.078 3.922 16 O -0.392 6.392 17 H 0.094 0.906 18 H 0.108 0.892 19 H 0.133 0.867 20 H 0.138 0.862 21 H 0.134 0.866 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.877 -0.102 0.975 4.000 hybrid contribution 0.283 -1.676 0.379 1.741 sum 4.160 -1.778 1.355 4.723 Atomic orbital electron populations 1.70569 1.09107 1.33149 1.31224 1.28446 0.95620 1.07519 0.89602 0.83017 0.74765 0.69710 0.79165 1.19832 1.17862 1.18957 1.20718 1.03821 0.95056 1.38497 0.90246 1.17753 0.91638 0.92717 0.90684 1.21127 1.05206 0.97216 1.02601 1.20954 0.98486 0.92887 0.98690 1.20803 1.04696 0.96680 1.05151 1.20710 0.95167 0.97594 0.95407 1.19930 1.05321 0.93365 1.04326 1.20329 0.95385 0.81159 0.95316 1.86381 1.63336 1.25058 1.64376 0.90571 0.89198 0.86650 0.86218 0.86645 0.93633 0.94062 0.75689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.58 12.33 21.83 0.27 -44.31 14 2 C 0.00 0.22 4.92 85.26 0.42 0.64 14 3 Si 1.12 42.63 30.00 68.60 2.06 44.69 14 4 H -0.27 -10.34 7.11 99.48 0.71 -9.64 14 5 H -0.25 -8.77 7.11 99.48 0.71 -8.06 14 6 H -0.26 -9.62 7.11 99.48 0.71 -8.92 14 7 C -0.55 -29.44 8.42 23.46 0.20 -29.24 14 8 H 0.08 4.02 7.08 -2.91 -0.02 4.00 14 9 C 0.07 4.07 5.29 -21.29 -0.11 3.96 14 10 C -0.24 -12.95 7.98 22.73 0.18 -12.77 14 11 C -0.09 -4.38 10.02 22.22 0.22 -4.16 14 12 C -0.25 -11.57 10.05 22.46 0.23 -11.34 14 13 C -0.07 -3.35 9.37 22.22 0.21 -3.14 14 14 C -0.23 -11.45 5.94 -19.40 -0.12 -11.57 14 15 C 0.16 6.51 6.24 71.23 0.44 6.95 14 16 O -0.58 -20.80 12.14 -148.98 -1.81 -22.61 14 17 H 0.28 16.14 6.77 -92.70 -0.63 15.52 14 18 H 0.09 4.99 6.55 -2.91 -0.02 4.97 14 19 H 0.12 4.76 8.06 -2.91 -0.02 4.73 14 20 H 0.12 4.63 8.06 -2.91 -0.02 4.61 14 21 H 0.12 5.05 7.00 -2.91 -0.02 5.03 14 22 H 0.05 1.84 7.80 -2.39 -0.02 1.82 14 23 H 0.04 1.73 8.14 -2.38 -0.02 1.71 14 24 H 0.39 9.09 9.12 -74.06 -0.68 8.42 14 Total: -1.00 -61.57 212.58 2.86 -58.71 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.67 Total: 24.19 kcal Atomic # 6 Polarization: -62.34 SS G_CDS: 1.67 Total: -60.67 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.27 Total: -44.31 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.81 Total: -22.61 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.06 Total: 44.69 kcal Total: -61.57 2.86 -58.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032158012.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.539 kcal (2) G-P(sol) polarization free energy of solvation -61.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds