Wall clock time and date at job start Mon Mar 30 2020 02:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29816 * 1 3 3 Si 1.86797 * 119.99754 * 2 1 4 4 H 1.48508 * 109.46932 * 240.00097 * 3 2 1 5 5 H 1.48496 * 109.47305 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47155 * 120.00475 * 3 2 1 7 7 C 1.41793 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99640 * 163.36825 * 7 2 1 9 9 C 1.39912 * 120.00023 * 343.37003 * 7 2 1 10 10 C 1.39913 * 119.50360 * 154.26387 * 9 7 2 11 11 C 1.40983 * 120.02828 * 179.97438 * 10 9 7 12 12 O 1.21786 * 120.48649 * 179.97438 * 11 10 9 13 13 C 1.48789 * 119.03077 * 0.02562 * 11 10 9 14 14 O 1.21632 * 120.47812 * 179.72129 * 13 11 10 15 15 C 1.46369 * 119.04088 * 0.02562 * 13 11 10 16 16 C 1.34733 * 119.91858 * 359.94702 * 15 13 11 17 17 H 0.96993 * 120.00000 * 359.97438 * 1 2 3 18 18 H 1.08003 * 119.98116 * 359.97438 * 10 9 7 19 19 H 1.07993 * 120.03849 * 179.97438 * 15 13 11 20 20 H 1.08001 * 119.50464 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2982 0.0000 0.0000 3 14 2.2321 1.6178 0.0000 4 1 3.0858 1.6964 -1.2126 5 1 1.2671 2.7464 0.0006 6 1 3.0859 1.6964 1.2125 7 6 2.0071 -1.2280 -0.0005 8 1 3.0531 -1.2474 -0.2683 9 6 1.3514 -2.4145 0.3457 10 6 1.8276 -3.6341 -0.1477 11 6 1.1757 -4.8364 0.1946 12 8 1.5827 -5.9026 -0.2305 13 6 -0.0176 -4.7835 1.0818 14 8 -0.6031 -5.8042 1.3898 15 6 -0.4806 -3.4849 1.5733 16 6 0.1736 -2.3609 1.2210 17 1 -0.4850 0.8400 0.0004 18 1 2.6948 -3.6544 -0.7910 19 1 -1.3452 -3.4278 2.2178 20 1 -0.1736 -1.4063 1.5878 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034478674.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:00 Heat of formation + Delta-G solvation = -75.339946 kcal Electronic energy + Delta-G solvation = -9750.136908 eV Core-core repulsion = 7683.440825 eV Total energy + Delta-G solvation = -2066.696083 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.042 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.92201 -38.27583 -37.80788 -35.26974 -31.72118 -29.31042 -26.43161 -22.95092 -22.55884 -19.62110 -17.86482 -17.51030 -17.06921 -16.38002 -15.97278 -14.97761 -14.59192 -14.15060 -13.98048 -13.79622 -13.55349 -13.05000 -12.48894 -12.02526 -11.86094 -11.66252 -11.18559 -9.68622 -9.59957 -9.24059 -7.12541 -0.90806 0.98864 1.35903 1.44269 1.58333 1.69606 2.07206 2.39861 3.19900 3.30322 3.92667 4.21663 4.51098 4.75049 4.98838 5.08167 5.31645 5.52437 5.76395 5.87446 6.14371 6.20253 6.47770 7.41853 7.53291 Molecular weight = 178.04amu Principal moments of inertia in cm(-1) A = 0.079378 B = 0.012662 C = 0.011229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.657931 B = 2210.829552 C = 2492.843449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.021 3.979 3 Si 1.011 2.989 4 H -0.253 1.253 5 H -0.251 1.251 6 H -0.247 1.247 7 C -0.297 4.297 8 H 0.123 0.877 9 C 0.074 3.926 10 C -0.479 4.479 11 C 0.284 3.716 12 O -0.608 6.608 13 C 0.342 3.658 14 O -0.494 6.494 15 C -0.265 4.265 16 C 0.020 3.980 17 H 0.330 0.670 18 H 0.092 0.908 19 H 0.156 0.844 20 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 14.560 2.369 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.209 4.209 3 Si 0.827 3.173 4 H -0.177 1.177 5 H -0.174 1.174 6 H -0.170 1.170 7 C -0.319 4.319 8 H 0.141 0.859 9 C 0.069 3.931 10 C -0.502 4.502 11 C 0.189 3.811 12 O -0.509 6.509 13 C 0.225 3.775 14 O -0.375 6.375 15 C -0.284 4.284 16 C 0.001 3.999 17 H 0.144 0.856 18 H 0.110 0.890 19 H 0.174 0.826 20 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.069 13.674 2.338 13.873 hybrid contribution 0.156 0.052 -0.188 0.250 sum 0.087 13.726 2.150 13.894 Atomic orbital electron populations 1.69226 1.10116 1.35682 1.18969 1.27819 0.95967 1.06003 0.91074 0.84748 0.78957 0.72266 0.81341 1.17677 1.17398 1.17024 1.21483 0.99277 0.90721 1.20404 0.85907 1.18975 0.90727 0.93551 0.89848 1.21483 1.13440 0.91986 1.23253 1.20724 0.86701 0.90233 0.83428 1.90422 1.68643 1.34890 1.56919 1.23891 0.84918 0.89903 0.78780 1.90413 1.55296 1.39700 1.52113 1.23471 1.05074 0.91726 1.08154 1.23154 0.88949 0.98229 0.89527 0.85585 0.88989 0.82638 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -23.72 10.87 22.15 0.24 -23.48 14 2 C 0.02 0.67 5.18 85.87 0.44 1.11 14 3 Si 1.01 22.58 29.60 68.60 2.03 24.61 14 4 H -0.25 -5.81 7.11 99.48 0.71 -5.11 14 5 H -0.25 -5.05 7.11 99.48 0.71 -4.34 14 6 H -0.25 -5.46 7.11 99.48 0.71 -4.75 14 7 C -0.30 -11.57 9.02 23.55 0.21 -11.36 14 8 H 0.12 4.43 7.92 -2.91 -0.02 4.41 14 9 C 0.07 3.41 5.68 -20.21 -0.11 3.29 14 10 C -0.48 -25.87 9.73 23.35 0.23 -25.65 14 11 C 0.28 16.90 6.99 25.77 0.18 17.08 14 12 O -0.61 -40.59 17.74 10.76 0.19 -40.40 14 13 C 0.34 18.46 7.18 27.21 0.20 18.65 14 14 O -0.49 -28.59 17.75 11.25 0.20 -28.39 14 15 C -0.26 -11.43 10.17 23.58 0.24 -11.19 14 16 C 0.02 0.83 8.71 23.72 0.21 1.03 14 17 H 0.33 8.83 8.27 -92.71 -0.77 8.06 14 18 H 0.09 5.02 8.06 -2.91 -0.02 5.00 14 19 H 0.16 5.60 8.06 -2.91 -0.02 5.58 14 20 H 0.16 5.64 6.21 -2.91 -0.02 5.62 14 Total: -1.00 -65.74 198.47 5.52 -60.22 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.27 Total: 14.47 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 1.59 Total: -7.03 kcal Atomic # 7 Polarization: -23.72 SS G_CDS: 0.24 Total: -23.48 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: 0.39 Total: -68.79 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: 2.03 Total: 24.61 kcal Total: -65.74 5.52 -60.22 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034478674.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.119 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds