Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46734 * 2 1 4 4 C 1.50699 * 109.47501 * 120.00144 * 2 1 3 5 5 H 1.07992 * 120.00169 * 120.00035 * 4 2 1 6 6 C 1.37880 * 119.99529 * 300.00391 * 4 2 1 7 7 N 1.31514 * 120.00271 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99634 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47404 * 89.99608 * 8 6 4 10 10 H 1.48502 * 109.46780 * 209.99963 * 8 6 4 11 11 H 1.48500 * 109.47040 * 329.99397 * 8 6 4 12 12 C 1.50703 * 109.46852 * 240.00198 * 2 1 3 13 13 C 1.38225 * 119.61869 * 324.99438 * 12 2 1 14 14 C 1.38635 * 119.15939 * 179.97438 * 13 12 2 15 15 C 1.38675 * 118.41956 * 0.02562 * 14 13 12 16 16 C 1.38186 * 119.16332 * 0.27967 * 15 14 13 17 17 N 1.31860 * 119.61591 * 144.97793 * 12 2 1 18 18 H 1.08995 * 109.47186 * 299.99568 * 1 2 3 19 19 H 1.08998 * 109.47380 * 60.00135 * 1 2 3 20 20 H 1.09004 * 109.46995 * 179.97438 * 1 2 3 21 21 H 0.96999 * 119.99517 * 180.02562 * 7 6 4 22 22 H 1.07997 * 120.42054 * 0.02562 * 13 12 2 23 23 H 1.07999 * 120.78848 * 179.97438 * 14 13 12 24 24 H 1.08002 * 120.41399 * 179.97438 * 15 14 13 25 25 H 1.07999 * 119.61418 * 179.70216 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3445 -0.9491 5.1122 11 1 2.4882 -2.5653 3.7121 12 6 2.0323 -0.7104 -1.2305 13 6 1.3320 -1.7934 -1.7278 14 6 1.8023 -2.4395 -2.8606 15 6 2.9650 -1.9703 -3.4532 16 6 3.6147 -0.8857 -2.8955 17 7 3.1346 -0.2914 -1.8205 18 1 -0.3633 0.5137 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7095 1.1617 3.4844 22 1 0.4295 -2.1315 -1.2405 23 1 1.2762 -3.2886 -3.2713 24 1 3.3603 -2.4497 -4.3366 25 1 4.5234 -0.5173 -3.3483 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035904533.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = 5.180648 kcal Electronic energy + Delta-G solvation = -10002.327028 eV Core-core repulsion = 8172.674336 eV Total energy + Delta-G solvation = -1829.652691 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93339 -36.40844 -33.46455 -33.17618 -30.17238 -27.31206 -24.86603 -24.02394 -21.72092 -18.44474 -17.60342 -17.01635 -16.60322 -15.85498 -15.06574 -14.65743 -14.26956 -13.73159 -13.47958 -12.91163 -12.85504 -12.65777 -12.27356 -12.00361 -11.64650 -11.18565 -10.63819 -10.54307 -10.05961 -9.61847 -8.13077 -6.28162 0.42003 0.57274 1.40420 1.41392 1.51959 2.41009 3.10717 3.13894 3.70173 4.13758 4.15803 4.39225 4.48469 4.79675 4.86439 4.96641 5.13575 5.20969 5.33278 5.43494 5.55808 5.84458 5.97190 6.06624 6.27048 6.77631 7.35953 7.40911 8.92047 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.061121 B = 0.012626 C = 0.011944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.997399 B = 2217.105567 C = 2343.739125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.080 3.920 3 H 0.001 0.999 4 C -0.521 4.521 5 H 0.043 0.957 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.269 1.269 12 C 0.140 3.860 13 C -0.187 4.187 14 C -0.075 4.075 15 C -0.188 4.188 16 C 0.078 3.922 17 N -0.533 5.533 18 H 0.063 0.937 19 H 0.026 0.974 20 H 0.045 0.955 21 H 0.265 0.735 22 H 0.135 0.865 23 H 0.167 0.833 24 H 0.171 0.829 25 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -6.669 -9.062 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.061 0.939 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.785 3.215 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.193 1.193 12 C 0.004 3.996 13 C -0.207 4.207 14 C -0.101 4.101 15 C -0.208 4.208 16 C -0.079 4.079 17 N -0.243 5.243 18 H 0.082 0.918 19 H 0.045 0.955 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.153 0.847 23 H 0.184 0.816 24 H 0.188 0.812 25 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.389 -5.834 -8.586 10.473 hybrid contribution -0.116 -0.684 0.696 0.983 sum 1.272 -6.518 -7.889 10.312 Atomic orbital electron populations 1.21673 0.96328 0.99962 1.00038 1.17669 0.93533 0.93980 0.88763 0.98043 1.21133 1.31501 1.12250 0.91049 0.93907 1.25723 0.95107 0.95716 1.01766 1.70008 1.37284 1.23842 1.24291 0.85527 0.78159 0.78977 0.78828 1.20374 1.20037 1.19324 1.21848 0.89824 0.93379 0.94559 1.22139 1.02460 0.97463 0.98590 1.21977 0.95702 0.98851 0.93535 1.22406 0.96936 0.98542 1.02868 1.23313 0.99763 0.93363 0.91433 1.67519 1.13409 1.32700 1.10658 0.91799 0.95534 0.93644 0.92620 0.84735 0.81599 0.81194 0.80845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.40 71.98 0.60 -5.43 15 2 C 0.08 4.34 2.62 -12.28 -0.03 4.31 15 3 H 0.00 0.09 8.14 -2.39 -0.02 0.07 15 4 C -0.52 -30.19 8.55 25.60 0.22 -29.98 15 5 H 0.04 2.50 7.74 -2.91 -0.02 2.48 15 6 C 0.02 0.90 5.30 84.66 0.45 1.35 15 7 N -0.92 -53.77 11.32 21.45 0.24 -53.53 15 8 Si 0.96 44.56 29.54 68.60 2.03 46.59 15 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 15 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 12 C 0.14 6.61 5.73 42.55 0.24 6.86 15 13 C -0.19 -7.23 9.18 22.36 0.21 -7.02 15 14 C -0.07 -2.19 10.18 22.47 0.23 -1.96 15 15 C -0.19 -5.09 10.11 22.36 0.23 -4.87 15 16 C 0.08 2.63 11.18 84.67 0.95 3.58 15 17 N -0.53 -24.16 10.27 -183.88 -1.89 -26.05 15 18 H 0.06 3.47 6.07 -2.39 -0.01 3.46 15 19 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.04 2.06 6.49 -2.38 -0.02 2.04 15 21 H 0.26 14.62 8.31 -92.71 -0.77 13.85 15 22 H 0.13 5.01 6.31 -2.91 -0.02 4.99 15 23 H 0.17 3.36 8.06 -2.91 -0.02 3.34 15 24 H 0.17 2.97 8.06 -2.91 -0.02 2.94 15 25 H 0.17 4.50 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -66.95 219.06 4.64 -62.31 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.17 Total: 3.83 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 3.09 Total: -33.16 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.65 Total: -79.58 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.95 4.64 -62.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035904533.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.494 kcal (2) G-P(sol) polarization free energy of solvation -66.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds