Wall clock time and date at job start Mon Mar 30 2020 01:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39935 * 119.61371 * 260.27924 * 3 2 1 5 5 C 1.38783 * 119.44515 * 179.76944 * 4 3 2 6 6 C 1.38210 * 118.68494 * 0.50035 * 5 4 3 7 7 C 1.40808 * 119.20351 * 359.74406 * 6 5 4 8 8 C 1.41437 * 119.75895 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99626 * 359.97438 * 8 7 6 10 10 C 1.40021 * 120.00295 * 179.97438 * 8 7 6 11 11 N 1.30743 * 119.99603 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00318 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47184 * 89.99984 * 12 10 8 14 14 H 1.48493 * 109.47408 * 209.99838 * 12 10 8 15 15 H 1.48505 * 109.46956 * 330.00254 * 12 10 8 16 16 N 1.32356 * 119.61807 * 80.55468 * 3 2 1 17 17 H 1.08005 * 120.27902 * 0.02562 * 4 3 2 18 18 H 1.07997 * 120.65562 * 180.24801 * 5 4 3 19 19 H 1.07991 * 120.39768 * 179.76913 * 6 5 4 20 20 H 0.97004 * 119.99544 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2594 0.2064 1.1991 5 6 4.6472 0.2015 1.1959 6 6 5.3071 0.0025 -0.0021 7 6 4.5553 -0.1937 -1.1763 8 6 5.2185 -0.3989 -2.4085 9 1 6.2978 -0.4043 -2.4464 10 6 4.4759 -0.5951 -3.5792 11 7 3.1693 -0.5891 -3.5332 12 14 5.3519 -0.8655 -5.2068 13 1 5.5858 -2.3181 -5.4078 14 1 4.5123 -0.3415 -6.3139 15 1 6.6541 -0.1518 -5.1925 16 7 3.2222 -0.1879 -1.1350 17 1 2.7175 0.3635 2.1201 18 1 5.2005 0.3543 2.1107 19 1 6.3865 -0.0028 -0.0370 20 1 2.6548 -0.7246 -4.3443 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039051259.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:39 Heat of formation + Delta-G solvation = 41.643051 kcal Electronic energy + Delta-G solvation = -9084.148348 eV Core-core repulsion = 7245.273831 eV Total energy + Delta-G solvation = -1838.874517 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 174.049 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.25525 -37.44764 -35.51248 -32.68004 -32.12373 -27.85236 -24.99755 -23.32179 -19.99589 -18.95440 -16.76831 -16.43237 -16.27751 -15.17458 -15.15800 -14.28770 -13.97064 -13.58496 -13.52874 -12.82564 -12.79461 -12.65776 -12.32084 -11.79881 -11.23409 -10.22302 -9.71632 -9.66323 -8.34328 -6.55430 0.22935 1.04352 1.44873 1.52925 1.59158 1.64682 2.11867 2.23973 2.90483 2.98727 3.87182 4.38581 4.65756 4.81621 4.83798 5.07831 5.29296 5.55629 5.74760 6.02815 6.20175 6.45341 6.68969 6.86491 7.94611 8.41332 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.051585 B = 0.015728 C = 0.012104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.658905 B = 1779.852256 C = 2312.669163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.303 3.697 3 C 0.173 3.827 4 C -0.250 4.250 5 C -0.053 4.053 6 C -0.248 4.248 7 C 0.220 3.780 8 C -0.457 4.457 9 H 0.104 0.896 10 C 0.022 3.978 11 N -0.762 5.762 12 Si 0.988 3.012 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.248 1.248 16 N -0.494 5.494 17 H 0.137 0.863 18 H 0.157 0.843 19 H 0.131 0.869 20 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 0.391 2.253 6.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.012 4.012 3 C 0.029 3.971 4 C -0.277 4.277 5 C -0.076 4.076 6 C -0.271 4.271 7 C 0.094 3.906 8 C -0.488 4.488 9 H 0.122 0.878 10 C -0.199 4.199 11 N -0.385 5.385 12 Si 0.809 3.191 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.171 1.171 16 N -0.210 5.210 17 H 0.155 0.845 18 H 0.175 0.825 19 H 0.149 0.851 20 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.457 0.241 1.332 3.713 hybrid contribution 0.813 -0.021 -0.056 0.816 sum 4.270 0.220 1.277 4.463 Atomic orbital electron populations 1.81008 1.12461 1.10511 1.10062 1.25829 0.92570 0.91902 0.90941 1.16942 0.85380 1.02105 0.92677 1.21497 0.95400 1.14126 0.96652 1.21325 0.93176 0.94991 0.98123 1.22251 1.00560 1.10873 0.93458 1.18989 0.87017 0.90327 0.94282 1.20096 0.95382 1.42159 0.91172 0.87835 1.27048 0.95295 0.92727 1.04861 1.70225 1.07968 1.29791 1.30483 0.85106 0.79188 0.79458 0.75394 1.18835 1.20105 1.17148 1.68628 1.10500 1.17560 1.24279 0.84507 0.82528 0.85127 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -21.32 18.54 19.00 0.35 -20.97 14 2 C 0.30 14.02 15.52 88.33 1.37 15.40 14 3 C 0.17 8.14 6.59 40.72 0.27 8.41 14 4 C -0.25 -9.70 9.80 22.81 0.22 -9.48 14 5 C -0.05 -1.89 10.15 22.39 0.23 -1.67 14 6 C -0.25 -10.35 9.83 22.89 0.23 -10.13 14 7 C 0.22 11.22 6.55 40.33 0.26 11.48 14 8 C -0.46 -22.86 9.14 23.49 0.21 -22.65 14 9 H 0.10 4.66 7.85 -2.91 -0.02 4.63 14 10 C 0.02 1.08 5.50 85.29 0.47 1.55 14 11 N -0.76 -40.83 11.46 21.84 0.25 -40.58 14 12 Si 0.99 36.47 29.56 68.60 2.03 38.50 14 13 H -0.26 -9.44 7.11 99.48 0.71 -8.74 14 14 H -0.28 -10.07 7.11 99.48 0.71 -9.36 14 15 H -0.25 -8.57 7.11 99.48 0.71 -7.86 14 16 N -0.49 -26.55 7.77 -182.58 -1.42 -27.96 14 17 H 0.14 4.39 8.06 -2.91 -0.02 4.37 14 18 H 0.16 4.13 8.06 -2.91 -0.02 4.11 14 19 H 0.13 4.75 8.06 -2.91 -0.02 4.73 14 20 H 0.28 13.69 8.29 -92.71 -0.77 12.92 14 Total: -1.00 -59.02 202.05 5.73 -53.29 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.26 Total: 4.81 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 3.26 Total: -7.08 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -0.82 Total: -89.51 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Total: -59.02 5.73 -53.29 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039051259.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.934 kcal (2) G-P(sol) polarization free energy of solvation -59.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds