Wall clock time and date at job start Mon Mar 30 2020 02:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00448 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00053 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.38068 * 119.57168 * 124.99909 * 10 9 7 12 12 C 1.38843 * 119.32489 * 180.02562 * 11 10 9 13 13 C 1.38339 * 118.50806 * 359.97438 * 12 11 10 14 14 C 1.39094 * 119.09738 * 0.02562 * 13 12 11 15 15 N 1.39012 * 119.70455 * 180.02562 * 14 13 12 16 16 N 1.31947 * 119.57421 * 304.72821 * 10 9 7 17 17 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 19 19 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 20 20 H 1.07999 * 120.33526 * 359.97438 * 11 10 9 21 21 H 1.08001 * 120.74573 * 180.02562 * 12 11 10 22 22 H 1.08000 * 120.45405 * 180.02562 * 13 12 11 23 23 H 0.97005 * 119.99739 * 359.97438 * 15 14 13 24 24 H 0.96998 * 120.00050 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.1496 -4.6100 0.9831 12 6 3.0548 -5.6628 0.9786 13 6 4.0116 -5.7066 -0.0196 14 6 4.0347 -4.6998 -0.9791 15 7 4.9904 -4.7315 -1.9880 16 7 3.1504 -3.7147 -0.9437 17 1 -0.4849 0.8400 0.0004 18 1 0.6248 -2.5571 0.8897 19 1 0.6240 -2.5567 -0.8903 20 1 1.3906 -4.5465 1.7488 21 1 3.0123 -6.4308 1.7367 22 1 4.7309 -6.5114 -0.0534 23 1 5.6375 -5.4534 -2.0205 24 1 5.0102 -4.0318 -2.6595 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039051363.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:16 Heat of formation + Delta-G solvation = 3.103288 kcal Electronic energy + Delta-G solvation = -9879.964760 eV Core-core repulsion = 7984.796077 eV Total energy + Delta-G solvation = -1895.168683 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.91246 -36.13743 -34.89933 -33.25688 -31.35089 -28.78841 -25.59385 -23.47769 -22.58827 -18.57257 -18.01325 -17.67428 -16.72138 -16.46137 -15.68757 -15.18234 -14.50701 -14.09633 -13.78734 -13.44207 -12.93151 -12.68621 -12.47871 -11.82420 -11.69803 -11.26348 -10.63360 -10.33806 -10.03036 -8.62574 -8.18337 -6.27824 0.54824 0.74861 1.38958 1.39806 1.53596 2.41992 2.78896 3.11786 3.21016 3.90625 4.19433 4.43438 4.51698 4.73047 5.04062 5.21709 5.33158 5.44884 5.58866 5.74855 5.89510 6.20370 6.56055 6.76942 6.82188 7.37972 7.66208 8.92562 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.057051 B = 0.011673 C = 0.010354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.673982 B = 2398.111958 C = 2703.570539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.048 0.952 9 C 0.064 3.936 10 C 0.183 3.817 11 C -0.255 4.255 12 C -0.030 4.030 13 C -0.255 4.255 14 C 0.378 3.622 15 N -0.844 5.844 16 N -0.573 5.573 17 H 0.265 0.735 18 H 0.023 0.977 19 H 0.007 0.993 20 H 0.132 0.868 21 H 0.169 0.831 22 H 0.162 0.838 23 H 0.420 0.580 24 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.811 -10.513 0.090 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.066 0.934 9 C 0.026 3.974 10 C 0.046 3.954 11 C -0.277 4.277 12 C -0.056 4.056 13 C -0.280 4.280 14 C 0.140 3.860 15 N -0.390 5.390 16 N -0.293 5.293 17 H 0.074 0.926 18 H 0.041 0.959 19 H 0.025 0.975 20 H 0.150 0.850 21 H 0.186 0.814 22 H 0.180 0.820 23 H 0.252 0.748 24 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.682 -9.788 -0.514 13.094 hybrid contribution 0.208 0.452 0.195 0.535 sum 8.889 -9.336 -0.319 12.895 Atomic orbital electron populations 1.70073 1.07449 1.27789 1.51856 1.25889 0.95843 1.02963 0.94865 0.85360 0.78590 0.78788 0.78023 1.19573 1.20159 1.19805 1.21257 0.92763 0.91138 1.50029 0.93412 1.18079 0.92362 0.90685 0.96236 1.21389 0.91520 0.93834 0.88680 1.21869 1.04996 0.98168 1.02680 1.21644 0.91170 0.96102 0.96647 1.21579 1.05459 1.02371 0.98573 1.18906 0.88367 0.89739 0.89005 1.42080 1.34473 1.32369 1.30053 1.66933 1.07420 1.25976 1.28959 0.92588 0.95853 0.97510 0.84968 0.81394 0.82020 0.74754 0.76967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.29 21.45 0.28 -57.29 14 2 C 0.00 0.11 5.46 84.66 0.46 0.57 14 3 Si 0.97 46.34 29.54 68.60 2.03 48.37 14 4 H -0.27 -12.76 7.11 99.48 0.71 -12.06 14 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 14 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 14 7 C -0.51 -31.17 8.91 25.60 0.23 -30.94 14 8 H 0.05 2.94 7.68 -2.91 -0.02 2.92 14 9 C 0.06 3.63 5.37 29.10 0.16 3.79 14 10 C 0.18 8.83 6.12 42.50 0.26 9.09 14 11 C -0.25 -9.96 9.70 22.37 0.22 -9.74 14 12 C -0.03 -0.90 10.17 22.44 0.23 -0.67 14 13 C -0.26 -7.38 9.94 22.50 0.22 -7.16 14 14 C 0.38 13.46 7.75 133.04 1.03 14.49 14 15 N -0.84 -21.95 9.07 -55.44 -0.50 -22.45 14 16 N -0.57 -26.67 10.00 -181.33 -1.81 -28.48 14 17 H 0.27 15.27 8.31 -92.71 -0.77 14.50 14 18 H 0.02 1.34 7.86 -2.39 -0.02 1.32 14 19 H 0.01 0.42 8.14 -2.39 -0.02 0.40 14 20 H 0.13 4.80 7.94 -2.91 -0.02 4.78 14 21 H 0.17 3.42 8.06 -2.91 -0.02 3.40 14 22 H 0.16 3.19 8.06 -2.91 -0.02 3.17 14 23 H 0.42 7.23 8.82 -92.70 -0.82 6.41 14 24 H 0.40 10.54 8.95 -92.71 -0.83 9.71 14 Total: -1.00 -72.06 220.47 2.37 -69.69 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -0.43 Total: 10.72 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 2.81 Total: -20.56 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -2.03 Total: -108.22 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.06 2.37 -69.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039051363.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.792 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds