Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36455 * 120.09350 * 2 1 4 4 C 1.39291 * 120.18725 * 180.27260 * 3 2 1 5 5 O 1.35670 * 119.82212 * 179.71975 * 4 3 2 6 6 C 1.39335 * 120.36065 * 359.44869 * 4 3 2 7 7 C 1.36419 * 120.18908 * 0.24508 * 6 4 3 8 8 C 1.40815 * 120.09406 * 179.70067 * 2 1 3 9 9 C 1.41212 * 120.18342 * 0.02562 * 8 2 1 10 10 H 1.08001 * 119.99569 * 333.63602 * 9 8 2 11 11 C 1.39891 * 120.00416 * 153.64179 * 9 8 2 12 12 N 1.30885 * 119.99630 * 343.92893 * 11 9 8 13 13 Si 1.86796 * 120.00043 * 163.93668 * 11 9 8 14 14 H 1.48500 * 109.47308 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47164 * 119.99897 * 13 11 9 16 16 H 1.48506 * 109.46748 * 239.99763 * 13 11 9 17 17 H 1.09003 * 109.46918 * 270.29908 * 1 2 3 18 18 H 1.08997 * 109.47493 * 30.30079 * 1 2 3 19 19 H 1.09002 * 109.47271 * 150.30546 * 1 2 3 20 20 H 1.08001 * 119.90566 * 0.02562 * 3 2 1 21 21 H 0.96702 * 114.00122 * 269.73136 * 5 4 3 22 22 H 1.08005 * 119.90505 * 180.27641 * 6 4 3 23 23 H 1.07996 * 120.09471 * 179.97438 * 7 6 4 24 24 H 0.96997 * 119.99628 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1806 0.0000 4 6 3.5841 1.1829 -0.0057 5 8 4.2568 2.3610 -0.0114 6 6 4.2904 -0.0182 0.0001 7 6 3.6216 -1.2072 0.0064 8 6 2.2131 -1.2183 0.0064 9 6 1.5130 -2.4446 0.0122 10 1 0.5173 -2.4960 0.4275 11 6 2.1090 -3.5930 -0.5197 12 7 3.1586 -3.4865 -1.2944 13 14 1.4069 -5.2783 -0.1244 14 1 0.2286 -5.1271 0.7666 15 1 0.9937 -5.9499 -1.3827 16 1 2.4408 -6.0976 0.5576 17 1 -0.3633 0.0054 1.0277 18 1 -0.3634 0.8872 -0.5185 19 1 -0.3634 -0.8927 -0.5091 20 1 1.6512 2.1159 0.0004 21 1 4.4519 2.6983 -0.8965 22 1 5.3704 -0.0078 0.0001 23 1 4.1705 -2.1372 0.0104 24 1 3.5716 -4.2828 -1.6635 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039059050.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = -40.047459 kcal Electronic energy + Delta-G solvation = -10115.503583 eV Core-core repulsion = 8186.170992 eV Total energy + Delta-G solvation = -1929.332591 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.24190 -35.87816 -33.35157 -31.19654 -29.03442 -26.17606 -24.45142 -21.05990 -19.86709 -17.35016 -16.70251 -15.39786 -14.26262 -14.18397 -13.77074 -12.70169 -12.53400 -11.88314 -11.73570 -11.60048 -11.18515 -11.17208 -10.71624 -10.32391 -10.07499 -9.66955 -9.26732 -8.97637 -7.46110 -7.20479 -6.79509 -4.37021 2.65234 2.97865 3.04957 3.09603 3.12052 3.89381 4.50823 5.41343 5.67686 6.20430 6.23849 6.39478 6.64796 6.68879 6.92691 7.03999 7.15111 7.32526 7.58636 7.64200 7.93601 8.01499 8.20372 8.49543 8.71602 8.83594 9.04392 10.13861 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.061530 B = 0.013985 C = 0.011766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.952942 B = 2001.679288 C = 2379.232097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.189 4.189 3 C -0.106 4.106 4 C -0.043 4.043 5 O -0.506 6.506 6 C -0.121 4.121 7 C -0.152 4.152 8 C 0.108 3.892 9 C -0.454 4.454 10 H 0.082 0.918 11 C 0.074 3.926 12 N -0.793 5.793 13 Si 0.909 3.091 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.272 1.272 17 H 0.042 0.958 18 H 0.038 0.962 19 H 0.063 0.937 20 H 0.093 0.907 21 H 0.354 0.646 22 H 0.092 0.908 23 H 0.121 0.879 24 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 0.758 -0.094 1.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.190 4.190 3 C -0.125 4.125 4 C -0.088 4.088 5 O -0.313 6.313 6 C -0.140 4.140 7 C -0.172 4.172 8 C 0.106 3.894 9 C -0.483 4.483 10 H 0.100 0.900 11 C -0.144 4.144 12 N -0.419 5.419 13 Si 0.733 3.267 14 H -0.183 1.183 15 H -0.200 1.200 16 H -0.197 1.197 17 H 0.061 0.939 18 H 0.057 0.943 19 H 0.081 0.919 20 H 0.111 0.889 21 H 0.205 0.795 22 H 0.110 0.890 23 H 0.139 0.861 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.321 0.540 0.389 1.479 hybrid contribution -0.087 -0.707 -0.498 0.870 sum -1.408 -0.167 -0.109 1.422 Atomic orbital electron populations 1.20409 0.93272 1.00681 0.99789 1.19439 0.94579 0.92674 1.12323 1.20437 0.93020 0.96672 1.02354 1.18074 0.89651 0.83917 1.17141 1.84819 1.77459 1.37667 1.31335 1.20731 0.97892 0.92772 1.02638 1.20964 0.94616 0.96230 1.05360 1.17552 0.91799 0.91796 0.88255 1.19603 1.02188 0.92318 1.34220 0.89988 1.25949 0.94240 1.01510 0.92708 1.69850 1.18311 1.31677 1.22030 0.86251 0.80061 0.81145 0.79239 1.18334 1.19971 1.19690 0.93898 0.94289 0.91859 0.88896 0.79518 0.88958 0.86124 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.40 36.01 0.34 -1.43 14 2 C -0.19 -4.65 5.90 -104.29 -0.62 -5.26 14 3 C -0.11 -2.52 9.57 -39.83 -0.38 -2.90 14 4 C -0.04 -1.05 6.73 -38.78 -0.26 -1.31 14 5 O -0.51 -10.77 13.48 -18.71 -0.25 -11.02 14 6 C -0.12 -3.00 9.92 -39.83 -0.40 -3.40 14 7 C -0.15 -4.03 8.63 -39.25 -0.34 -4.36 14 8 C 0.11 2.89 5.56 -106.80 -0.59 2.30 14 9 C -0.45 -11.81 8.10 -37.83 -0.31 -12.11 14 10 H 0.08 2.04 6.89 -52.49 -0.36 1.68 14 11 C 0.07 1.82 5.16 -17.34 -0.09 1.73 14 12 N -0.79 -20.28 10.97 55.54 0.61 -19.67 14 13 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 14 14 H -0.26 -5.19 7.11 56.52 0.40 -4.79 14 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 16 H -0.27 -5.42 7.11 56.52 0.40 -5.02 14 17 H 0.04 0.83 8.14 -51.93 -0.42 0.41 14 18 H 0.04 0.72 8.08 -51.93 -0.42 0.30 14 19 H 0.06 1.33 6.78 -51.93 -0.35 0.98 14 20 H 0.09 1.99 8.06 -52.49 -0.42 1.57 14 21 H 0.35 5.79 9.06 45.56 0.41 6.21 14 22 H 0.09 2.09 8.06 -52.48 -0.42 1.66 14 23 H 0.12 3.25 6.22 -52.49 -0.33 2.92 14 24 H 0.28 6.49 8.30 -40.82 -0.34 6.15 14 LS Contribution 213.91 15.07 3.22 3.22 Total: -1.00 -28.32 213.91 -5.54 -33.86 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -1.45 Total: 7.01 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -2.64 Total: -26.75 kcal Atomic # 7 Polarization: -20.28 SS G_CDS: 0.61 Total: -19.67 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.25 Total: -11.02 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -28.32 -5.54 -33.86 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039059050.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.188 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds