Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38622 * 119.34056 * 2 1 4 4 C 1.38012 * 119.42386 * 180.02562 * 3 2 1 5 5 C 1.41114 * 118.19683 * 359.94338 * 4 3 2 6 6 C 1.41413 * 120.65895 * 180.29484 * 5 4 3 7 7 H 1.07998 * 119.99850 * 154.73249 * 6 5 4 8 8 C 1.39947 * 120.00067 * 334.72199 * 6 5 4 9 9 N 1.30816 * 120.00090 * 343.83195 * 8 6 5 10 10 Si 1.86806 * 119.99901 * 163.82724 * 8 6 5 11 11 H 1.48499 * 109.46896 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46911 * 120.00095 * 10 8 6 13 13 H 1.48497 * 109.46827 * 240.00506 * 10 8 6 14 14 C 1.40711 * 118.67425 * 0.02562 * 5 4 3 15 15 C 1.50700 * 119.79644 * 180.02562 * 14 5 4 16 16 N 1.31493 * 120.40399 * 0.02562 * 14 5 4 17 17 H 1.09003 * 109.47167 * 270.01896 * 1 2 3 18 18 H 1.09007 * 109.47183 * 30.02045 * 1 2 3 19 19 H 1.09001 * 109.47431 * 150.01951 * 1 2 3 20 20 H 1.07997 * 120.29177 * 0.02562 * 3 2 1 21 21 H 1.08004 * 120.90391 * 179.97438 * 4 3 2 22 22 H 0.97007 * 120.00346 * 179.97438 * 9 8 6 23 23 H 1.08999 * 109.47269 * 90.00065 * 15 14 5 24 24 H 1.09007 * 109.47046 * 210.00273 * 15 14 5 25 25 H 1.09002 * 109.47269 * 330.00092 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2084 0.0000 4 6 3.5663 1.2104 -0.0005 5 6 4.2349 -0.0323 0.0002 6 6 5.6478 -0.0910 0.0059 7 1 6.1506 -0.9592 0.4058 8 6 6.3946 0.9758 -0.5067 9 7 5.8191 1.8713 -1.2671 10 14 8.2132 1.1210 -0.1051 11 1 8.6194 -0.0104 0.7667 12 1 9.0022 1.0844 -1.3626 13 1 8.4635 2.4041 0.5993 14 6 3.4676 -1.2118 0.0008 15 6 4.1555 -2.5526 0.0021 16 7 2.1541 -1.1512 0.0003 17 1 -0.3633 0.0003 1.0277 18 1 -0.3634 0.8899 -0.5142 19 1 -0.3634 -0.8902 -0.5135 20 1 1.6402 2.1402 0.0004 21 1 4.1197 2.1379 -0.0010 22 1 6.3366 2.6110 -1.6222 23 1 4.3209 -2.8751 1.0301 24 1 3.5296 -3.2826 -0.5114 25 1 5.1134 -2.4701 -0.5114 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369239.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = -11.194144 kcal Electronic energy + Delta-G solvation = -10031.827778 eV Core-core repulsion = 8201.465022 eV Total energy + Delta-G solvation = -1830.362756 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.36001 -36.09335 -33.98599 -32.56926 -29.88244 -28.67281 -25.62285 -22.73964 -22.06280 -19.18066 -17.40106 -16.47326 -15.91470 -15.33589 -15.15338 -14.20611 -13.85547 -13.72639 -13.32810 -13.17435 -12.88275 -12.64092 -12.59748 -12.42338 -12.09828 -11.52776 -11.16577 -10.10631 -9.89229 -9.26990 -8.67085 -6.39025 0.76592 1.04331 1.39637 1.50608 1.55471 2.19138 2.70847 3.63783 3.95972 4.39661 4.55531 4.65996 4.83043 4.92921 4.98180 5.02788 5.07959 5.15976 5.28032 5.34504 5.53525 5.82587 5.99025 6.09130 6.53479 6.78961 6.83593 7.77501 8.27243 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.062996 B = 0.014067 C = 0.011878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.363473 B = 1989.988876 C = 2356.709646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.025 4.025 3 C -0.158 4.158 4 C -0.159 4.159 5 C 0.032 3.968 6 C -0.475 4.475 7 H 0.090 0.910 8 C 0.032 3.968 9 N -0.825 5.825 10 Si 0.988 3.012 11 H -0.254 1.254 12 H -0.266 1.266 13 H -0.266 1.266 14 C -0.017 4.017 15 C -0.064 4.064 16 N -0.484 5.484 17 H 0.067 0.933 18 H 0.075 0.925 19 H 0.059 0.941 20 H 0.125 0.875 21 H 0.114 0.886 22 H 0.290 0.710 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 -0.313 1.618 1.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.163 4.163 3 C -0.178 4.178 4 C -0.185 4.185 5 C 0.028 3.972 6 C -0.505 4.505 7 H 0.108 0.892 8 C -0.183 4.183 9 N -0.450 5.450 10 Si 0.808 3.192 11 H -0.177 1.177 12 H -0.191 1.191 13 H -0.190 1.190 14 C -0.158 4.158 15 C -0.122 4.122 16 N -0.194 5.194 17 H 0.085 0.915 18 H 0.094 0.906 19 H 0.078 0.922 20 H 0.143 0.857 21 H 0.132 0.868 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.465 -0.866 1.469 1.767 hybrid contribution 1.174 1.182 -0.041 1.666 sum 0.708 0.316 1.428 1.625 Atomic orbital electron populations 1.20335 0.88065 1.02252 1.01919 1.21114 0.97324 0.88229 1.09627 1.21750 0.94825 0.98531 1.02657 1.21734 0.93619 0.98466 1.04718 1.18729 0.95314 0.92070 0.91058 1.19863 0.90955 1.03871 1.35790 0.89223 1.26887 1.06144 0.93612 0.91666 1.69853 1.40797 1.11474 1.22920 0.85065 0.75328 0.79566 0.79233 1.17682 1.19058 1.19025 1.21632 0.89100 0.96064 1.09041 1.20242 0.99109 0.91482 1.01335 1.66733 1.10439 1.30189 1.12015 0.91460 0.90621 0.92161 0.85734 0.86837 0.89890 0.91968 0.92109 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.41 10.16 71.24 0.72 -1.68 15 2 C -0.03 -1.17 6.79 42.62 0.29 -0.89 15 3 C -0.16 -7.57 9.71 22.31 0.22 -7.36 15 4 C -0.16 -8.57 8.81 22.92 0.20 -8.37 15 5 C 0.03 1.78 5.58 -21.19 -0.12 1.66 15 6 C -0.48 -24.97 8.16 23.47 0.19 -24.78 15 7 H 0.09 4.44 6.87 -2.91 -0.02 4.42 15 8 C 0.03 1.58 5.19 85.26 0.44 2.02 15 9 N -0.82 -42.41 10.95 21.83 0.24 -42.17 15 10 Si 0.99 36.90 29.59 68.60 2.03 38.93 15 11 H -0.25 -9.17 7.11 99.48 0.71 -8.46 15 12 H -0.27 -9.53 7.11 99.48 0.71 -8.83 15 13 H -0.27 -9.59 7.11 99.48 0.71 -8.88 15 14 C -0.02 -0.87 6.85 43.21 0.30 -0.57 15 15 C -0.06 -2.76 9.58 71.24 0.68 -2.08 15 16 N -0.48 -24.62 10.16 -169.99 -1.73 -26.35 15 17 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 18 H 0.07 2.29 8.07 -2.38 -0.02 2.27 15 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 20 H 0.12 5.11 8.06 -2.91 -0.02 5.09 15 21 H 0.11 6.23 6.26 -2.91 -0.02 6.22 15 22 H 0.29 13.39 8.30 -92.70 -0.77 12.62 15 23 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.06 2.40 8.14 -2.38 -0.02 2.38 15 25 H 0.07 2.83 6.77 -2.39 -0.02 2.81 15 Total: -1.00 -60.06 219.74 4.64 -55.42 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.18 Total: 16.20 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 2.93 Total: -42.04 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -1.49 Total: -68.51 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -60.06 4.64 -55.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369239.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.226 kcal (2) G-P(sol) polarization free energy of solvation -60.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds