Wall clock time and date at job start Mon Mar 30 2020 01:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.40243 * 120.84577 * 311.44576 * 3 2 1 5 5 C 1.38570 * 119.39387 * 179.97438 * 4 3 2 6 6 N 1.31433 * 121.16862 * 0.02562 * 5 4 3 7 7 C 1.33606 * 121.84821 * 359.65802 * 6 5 4 8 8 C 1.41411 * 119.76056 * 180.33788 * 7 6 5 9 9 H 1.07995 * 119.99473 * 180.29057 * 8 7 6 10 10 C 1.40050 * 120.00133 * 0.29326 * 8 7 6 11 11 N 1.30726 * 120.00119 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00053 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47272 * 59.99108 * 12 10 8 14 14 H 1.48499 * 109.47388 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46947 * 299.99696 * 12 10 8 16 16 C 1.39473 * 120.84980 * 131.42529 * 3 2 1 17 17 H 1.08000 * 120.30529 * 359.95906 * 4 3 2 18 18 H 1.07999 * 119.41745 * 179.97438 * 5 4 3 19 19 H 0.96999 * 120.00357 * 179.97438 * 11 10 8 20 20 H 1.08002 * 120.59021 * 0.02562 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2874 -0.7960 0.9025 5 6 4.6726 -0.7726 0.8759 6 7 5.3238 -0.0167 0.0202 7 6 4.6873 0.7560 -0.8646 8 6 5.4322 1.5465 -1.7700 9 1 4.9216 2.1760 -2.4836 10 6 6.8320 1.5131 -1.7412 11 7 7.4501 0.7514 -0.8771 12 14 7.8160 2.5579 -2.9368 13 1 7.4870 3.9910 -2.7287 14 1 9.2669 2.3445 -2.7027 15 1 7.4765 2.1693 -4.3293 16 6 3.2828 0.7932 -0.8978 17 1 2.7666 -1.4219 1.6121 18 1 5.2270 -1.3856 1.5710 19 1 8.4196 0.7279 -0.8574 20 1 2.7662 1.4209 -1.6088 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370076.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:51 Heat of formation + Delta-G solvation = 40.200738 kcal Electronic energy + Delta-G solvation = -8997.422330 eV Core-core repulsion = 7158.485270 eV Total energy + Delta-G solvation = -1838.937060 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 174.049 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.20505 -37.61508 -35.50054 -32.83083 -31.97494 -27.69549 -24.96005 -23.32460 -20.56304 -18.15749 -17.02499 -16.35140 -16.19781 -15.33733 -15.00166 -14.41611 -13.96427 -13.80865 -13.76814 -12.96482 -12.78994 -12.68339 -12.20102 -11.74444 -11.19817 -10.20252 -9.65152 -9.59718 -8.32196 -6.54111 0.25101 0.85096 1.47338 1.57622 1.58328 1.61411 2.25897 2.26092 2.88448 3.00268 3.88561 4.21669 4.58953 4.72691 4.85875 5.17640 5.31543 5.41898 5.60720 5.94852 6.24918 6.43777 6.65250 6.88610 8.11578 8.42921 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.078227 B = 0.012401 C = 0.010744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.846848 B = 2257.370095 C = 2605.368910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.293 3.707 3 C 0.021 3.979 4 C -0.267 4.267 5 C 0.120 3.880 6 N -0.507 5.507 7 C 0.224 3.776 8 C -0.456 4.456 9 H 0.096 0.904 10 C 0.026 3.974 11 N -0.747 5.747 12 Si 0.986 3.014 13 H -0.259 1.259 14 H -0.269 1.269 15 H -0.259 1.259 16 C -0.230 4.230 17 H 0.136 0.864 18 H 0.156 0.844 19 H 0.283 0.717 20 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 0.440 -0.522 1.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.022 4.022 3 C 0.012 3.988 4 C -0.291 4.291 5 C -0.044 4.044 6 N -0.220 5.220 7 C 0.099 3.901 8 C -0.487 4.487 9 H 0.114 0.886 10 C -0.197 4.197 11 N -0.369 5.369 12 Si 0.806 3.194 13 H -0.184 1.184 14 H -0.194 1.194 15 H -0.184 1.184 16 C -0.257 4.257 17 H 0.154 0.846 18 H 0.174 0.826 19 H 0.093 0.907 20 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.664 0.388 -0.456 0.894 hybrid contribution -0.147 0.293 -0.338 0.471 sum 0.517 0.681 -0.794 1.167 Atomic orbital electron populations 1.81115 1.12499 1.10371 1.10242 1.25938 0.92671 0.91803 0.91751 1.16039 0.83202 1.00272 0.99293 1.21626 0.95345 1.07323 1.04846 1.23017 0.91053 0.94903 0.95460 1.68657 1.38982 1.08460 1.05912 1.18888 0.88750 0.91059 0.91368 1.20049 0.92232 1.21460 1.14924 0.88635 1.26948 0.99156 0.96239 0.97377 1.70168 1.10513 1.28051 1.28122 0.85195 0.76902 0.78832 0.78452 1.18368 1.19360 1.18354 1.21955 0.95006 1.05347 1.03350 0.84649 0.82635 0.90661 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.39 18.54 19.00 0.35 -18.03 14 2 C 0.29 11.34 15.40 88.33 1.36 12.70 14 3 C 0.02 0.88 5.75 -21.25 -0.12 0.76 14 4 C -0.27 -10.36 9.87 22.84 0.23 -10.14 14 5 C 0.12 5.12 11.17 84.83 0.95 6.07 14 6 N -0.51 -25.76 7.84 -189.33 -1.48 -27.24 14 7 C 0.22 11.37 6.55 40.22 0.26 11.63 14 8 C -0.46 -22.76 9.14 23.49 0.21 -22.55 14 9 H 0.10 4.39 7.85 -2.91 -0.02 4.37 14 10 C 0.03 1.22 5.50 85.30 0.47 1.69 14 11 N -0.75 -37.41 11.46 21.84 0.25 -37.16 14 12 Si 0.99 35.31 29.56 68.60 2.03 37.34 14 13 H -0.26 -9.03 7.11 99.48 0.71 -8.32 14 14 H -0.27 -9.22 7.11 99.48 0.71 -8.51 14 15 H -0.26 -9.02 7.11 99.48 0.71 -8.31 14 16 C -0.23 -10.38 9.58 23.13 0.22 -10.16 14 17 H 0.14 4.39 8.06 -2.91 -0.02 4.36 14 18 H 0.16 5.58 8.06 -2.91 -0.02 5.55 14 19 H 0.28 12.77 8.29 -92.71 -0.77 12.00 14 20 H 0.12 4.99 8.06 -2.91 -0.02 4.97 14 Total: -1.00 -54.96 201.99 5.98 -48.98 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.26 Total: 6.10 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 3.58 Total: -9.99 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -0.88 Total: -82.43 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -54.96 5.98 -48.98 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370076.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.181 kcal (2) G-P(sol) polarization free energy of solvation -54.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds