Wall clock time and date at job start Mon Mar 30 2020 02:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47548 * 2 1 4 4 C 1.38964 * 120.70263 * 269.97976 * 3 2 1 5 5 C 1.38756 * 119.55720 * 180.02562 * 4 3 2 6 6 N 1.31432 * 121.00764 * 359.97438 * 5 4 3 7 7 C 1.33603 * 121.51824 * 359.72325 * 6 5 4 8 8 C 1.41403 * 119.83254 * 180.26661 * 7 6 5 9 9 H 1.08000 * 120.00641 * 174.05944 * 8 7 6 10 10 C 1.40041 * 119.99845 * 354.06469 * 8 7 6 11 11 N 1.30740 * 119.99616 * 6.34462 * 10 8 7 12 12 Si 1.86792 * 120.00244 * 186.34505 * 10 8 7 13 13 H 1.48496 * 109.47619 * 94.98325 * 12 10 8 14 14 H 1.48500 * 109.47261 * 214.98832 * 12 10 8 15 15 H 1.48510 * 109.47143 * 334.98141 * 12 10 8 16 16 C 1.38149 * 120.70503 * 89.99600 * 3 2 1 17 17 H 1.09003 * 109.47057 * 59.99966 * 1 2 3 18 18 H 1.08994 * 109.47470 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.46915 * 300.00351 * 1 2 3 20 20 H 1.09001 * 109.47349 * 239.99487 * 2 1 3 21 21 H 1.09003 * 109.47057 * 120.00033 * 2 1 3 22 22 H 1.08006 * 120.22563 * 359.97438 * 4 3 2 23 23 H 1.07997 * 119.49579 * 179.97438 * 5 4 3 24 24 H 0.97003 * 119.99732 * 179.97438 * 11 10 8 25 25 H 1.08000 * 120.50623 * 359.95908 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2694 2.0896 -1.1949 5 6 2.7324 3.3973 -1.1671 6 7 2.9502 4.0144 -0.0273 7 6 2.7308 3.4132 1.1455 8 6 2.9719 4.1127 2.3505 9 1 2.7057 3.6658 3.2970 10 6 3.5558 5.3851 2.3167 11 7 3.7641 5.9785 1.1704 12 14 4.0371 6.2346 3.9091 13 1 5.4703 5.9729 4.1963 14 1 3.8180 7.6973 3.7758 15 1 3.2054 5.7090 5.0215 16 6 2.2675 2.0859 1.1878 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5139 0.8900 22 1 2.0951 1.5945 -2.1388 23 1 2.9166 3.9160 -2.0963 24 1 4.1682 6.8600 1.1470 25 1 2.0935 1.5958 2.1343 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044371400.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:38 Heat of formation + Delta-G solvation = 13.936041 kcal Electronic energy + Delta-G solvation = -9903.393757 eV Core-core repulsion = 8074.120728 eV Total energy + Delta-G solvation = -1829.273029 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.21165 -34.21805 -33.00103 -29.88929 -28.91362 -25.62566 -23.29111 -21.34438 -20.15718 -16.99348 -15.48096 -14.57380 -14.42763 -13.97994 -13.12281 -13.05088 -12.44724 -12.13953 -11.61193 -11.30474 -11.10806 -10.85385 -10.69665 -10.46277 -10.26230 -9.73873 -9.29610 -7.94534 -7.57228 -7.49394 -6.36473 -4.47861 2.79828 3.02537 3.10653 3.14300 3.22915 3.97538 4.78219 5.55918 5.58597 5.79267 6.06964 6.13300 6.26265 6.27197 6.36708 6.60792 6.67494 6.84297 6.99480 7.19560 7.43334 7.62113 7.83987 8.10763 8.28382 8.71867 8.98708 10.17438 10.36624 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.070971 B = 0.012127 C = 0.010682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.432423 B = 2308.272441 C = 2620.656261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C -0.028 4.028 4 C -0.315 4.315 5 C 0.122 3.878 6 N -0.488 5.488 7 C 0.256 3.744 8 C -0.437 4.437 9 H 0.082 0.918 10 C 0.069 3.931 11 N -0.718 5.718 12 Si 0.907 3.093 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.262 1.262 16 C -0.272 4.272 17 H 0.052 0.948 18 H 0.046 0.954 19 H 0.054 0.946 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.091 0.909 23 H 0.117 0.883 24 H 0.272 0.728 25 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -4.298 0.151 4.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.034 4.034 4 C -0.339 4.339 5 C -0.043 4.043 6 N -0.201 5.201 7 C 0.131 3.869 8 C -0.468 4.468 9 H 0.101 0.899 10 C -0.155 4.155 11 N -0.340 5.340 12 Si 0.731 3.269 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.185 1.185 16 C -0.294 4.294 17 H 0.072 0.928 18 H 0.065 0.935 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.109 0.891 23 H 0.134 0.866 24 H 0.083 0.917 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.642 -3.227 0.099 3.623 hybrid contribution -0.059 -0.489 0.585 0.765 sum -1.702 -3.716 0.684 4.144 Atomic orbital electron populations 1.21684 0.95648 1.00316 1.02124 1.20421 0.95494 0.94438 1.01171 1.19609 0.96046 0.94034 0.93729 1.21164 1.18170 0.98440 0.96099 1.22515 0.93846 0.91173 0.96797 1.68740 1.19578 1.35169 0.96581 1.18610 0.88002 0.88392 0.91871 1.19610 1.34491 0.99901 0.92796 0.89941 1.26074 0.94693 0.97431 0.97344 1.70148 1.26303 1.11753 1.25776 0.86330 0.79656 0.78671 0.82234 1.19495 1.20129 1.18541 1.21596 1.14239 0.97663 0.95952 0.92849 0.93474 0.92711 0.92265 0.92139 0.89083 0.86584 0.91710 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.90 37.16 0.37 -1.85 15 2 C -0.08 -1.39 6.11 -27.88 -0.17 -1.56 15 3 C -0.03 -0.64 5.16 -104.39 -0.54 -1.18 15 4 C -0.32 -7.32 9.83 -39.12 -0.38 -7.70 15 5 C 0.12 3.08 11.18 -17.53 -0.20 2.89 15 6 N -0.49 -13.99 7.89 -11.12 -0.09 -14.08 15 7 C 0.26 7.26 6.55 -84.98 -0.56 6.71 15 8 C -0.44 -12.06 9.14 -37.70 -0.34 -12.41 15 9 H 0.08 2.13 7.85 -52.49 -0.41 1.72 15 10 C 0.07 1.82 5.49 -17.34 -0.10 1.73 15 11 N -0.72 -19.70 11.49 55.55 0.64 -19.07 15 12 Si 0.91 18.98 29.56 -169.99 -5.03 13.95 15 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 14 H -0.28 -5.64 7.11 56.52 0.40 -5.23 15 15 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 16 C -0.27 -6.90 9.54 -38.70 -0.37 -7.26 15 17 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 18 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 20 H 0.06 0.97 8.10 -51.93 -0.42 0.55 15 21 H 0.06 1.02 8.10 -51.93 -0.42 0.60 15 22 H 0.09 1.86 8.06 -52.48 -0.42 1.44 15 23 H 0.12 2.60 8.06 -52.49 -0.42 2.18 15 24 H 0.27 6.72 8.29 -40.82 -0.34 6.38 15 25 H 0.10 2.28 8.06 -52.49 -0.42 1.85 15 LS Contribution 224.10 15.07 3.38 3.38 Total: -1.00 -29.69 224.10 -6.31 -36.00 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -2.92 Total: 0.46 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.29 Total: -20.64 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.55 Total: -33.14 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.69 -6.31 -36.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371400.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.935 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds