Wall clock time and date at job start Mon Mar 30 2020 02:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47548 * 2 1 4 4 C 1.38964 * 120.70263 * 269.97976 * 3 2 1 5 5 C 1.38756 * 119.55720 * 180.02562 * 4 3 2 6 6 N 1.31432 * 121.00764 * 359.97438 * 5 4 3 7 7 C 1.33603 * 121.51824 * 359.72325 * 6 5 4 8 8 C 1.41403 * 119.83254 * 180.26661 * 7 6 5 9 9 H 1.08000 * 120.00641 * 174.05944 * 8 7 6 10 10 C 1.40041 * 119.99845 * 354.06469 * 8 7 6 11 11 N 1.30740 * 119.99616 * 6.34462 * 10 8 7 12 12 Si 1.86792 * 120.00244 * 186.34505 * 10 8 7 13 13 H 1.48496 * 109.47619 * 94.98325 * 12 10 8 14 14 H 1.48500 * 109.47261 * 214.98832 * 12 10 8 15 15 H 1.48510 * 109.47143 * 334.98141 * 12 10 8 16 16 C 1.38149 * 120.70503 * 89.99600 * 3 2 1 17 17 H 1.09003 * 109.47057 * 59.99966 * 1 2 3 18 18 H 1.08994 * 109.47470 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.46915 * 300.00351 * 1 2 3 20 20 H 1.09001 * 109.47349 * 239.99487 * 2 1 3 21 21 H 1.09003 * 109.47057 * 120.00033 * 2 1 3 22 22 H 1.08006 * 120.22563 * 359.97438 * 4 3 2 23 23 H 1.07997 * 119.49579 * 179.97438 * 5 4 3 24 24 H 0.97003 * 119.99732 * 179.97438 * 11 10 8 25 25 H 1.08000 * 120.50623 * 359.95908 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2694 2.0896 -1.1949 5 6 2.7324 3.3973 -1.1671 6 7 2.9502 4.0144 -0.0273 7 6 2.7308 3.4132 1.1455 8 6 2.9719 4.1127 2.3505 9 1 2.7057 3.6658 3.2970 10 6 3.5558 5.3851 2.3167 11 7 3.7641 5.9785 1.1704 12 14 4.0371 6.2346 3.9091 13 1 5.4703 5.9729 4.1963 14 1 3.8180 7.6973 3.7758 15 1 3.2054 5.7090 5.0215 16 6 2.2675 2.0859 1.1878 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5139 0.8900 22 1 2.0951 1.5945 -2.1388 23 1 2.9166 3.9160 -2.0963 24 1 4.1682 6.8600 1.1470 25 1 2.0935 1.5958 2.1343 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044371400.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:38 Heat of formation + Delta-G solvation = -3.631635 kcal Electronic energy + Delta-G solvation = -9904.155548 eV Core-core repulsion = 8074.120728 eV Total energy + Delta-G solvation = -1830.034821 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.13025 -35.98766 -34.80698 -31.86624 -30.59111 -27.61179 -24.85424 -23.28285 -21.93946 -18.92499 -17.35896 -16.38303 -16.21283 -15.77225 -14.69733 -14.61866 -14.22245 -13.90201 -13.25005 -13.00987 -12.76465 -12.69669 -12.29283 -12.04303 -11.86616 -11.50059 -11.18736 -9.84574 -9.56114 -9.47756 -8.30225 -6.52705 0.89990 1.14083 1.39501 1.53289 1.54788 2.22677 2.83662 3.90503 4.09302 4.17663 4.31064 4.59103 4.74344 4.82556 4.90040 4.97128 5.06302 5.14430 5.30520 5.39290 5.54461 5.68186 5.96666 6.16822 6.31320 6.74603 6.97671 8.19889 8.45554 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.070971 B = 0.012127 C = 0.010682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.432423 B = 2308.272441 C = 2620.656261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.026 4.026 4 C -0.309 4.309 5 C 0.100 3.900 6 N -0.527 5.527 7 C 0.221 3.779 8 C -0.476 4.476 9 H 0.087 0.913 10 C 0.022 3.978 11 N -0.761 5.761 12 Si 0.990 3.010 13 H -0.263 1.263 14 H -0.266 1.266 15 H -0.254 1.254 16 C -0.293 4.293 17 H 0.050 0.950 18 H 0.082 0.918 19 H 0.041 0.959 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.125 0.875 23 H 0.136 0.864 24 H 0.279 0.721 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -5.388 0.340 5.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 C -0.032 4.032 4 C -0.332 4.332 5 C -0.064 4.064 6 N -0.241 5.241 7 C 0.096 3.904 8 C -0.507 4.507 9 H 0.105 0.895 10 C -0.199 4.199 11 N -0.383 5.383 12 Si 0.810 3.190 13 H -0.188 1.188 14 H -0.191 1.191 15 H -0.177 1.177 16 C -0.316 4.316 17 H 0.069 0.931 18 H 0.100 0.900 19 H 0.060 0.940 20 H 0.099 0.901 21 H 0.089 0.911 22 H 0.143 0.857 23 H 0.154 0.846 24 H 0.089 0.911 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.992 -4.340 0.265 4.782 hybrid contribution 0.002 -0.259 0.398 0.475 sum -1.989 -4.598 0.663 5.054 Atomic orbital electron populations 1.21652 0.93860 1.02428 1.01384 1.20510 0.96893 0.91100 1.02798 1.20182 0.94089 0.96400 0.92572 1.21549 1.16244 0.97661 0.97782 1.22996 0.94085 0.92558 0.96778 1.68678 1.21192 1.36713 0.97542 1.19086 0.88992 0.89970 0.92310 1.19993 1.36312 1.01379 0.93023 0.89466 1.27054 0.93904 0.97574 1.01339 1.70246 1.27221 1.12462 1.28377 0.85088 0.79338 0.77490 0.77087 1.18797 1.19095 1.17746 1.21782 1.15072 0.97163 0.97554 0.93111 0.89955 0.93988 0.90070 0.91123 0.85733 0.84629 0.91070 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.90 71.98 0.71 -3.13 15 2 C -0.08 -2.47 6.11 29.85 0.18 -2.29 15 3 C -0.03 -1.16 5.16 -19.71 -0.10 -1.26 15 4 C -0.31 -13.85 9.83 22.57 0.22 -13.63 15 5 C 0.10 5.04 11.18 84.88 0.95 5.99 15 6 N -0.53 -31.01 7.89 -189.10 -1.49 -32.50 15 7 C 0.22 12.90 6.55 40.24 0.26 13.16 15 8 C -0.48 -27.01 9.14 23.49 0.21 -26.80 15 9 H 0.09 4.63 7.85 -2.91 -0.02 4.60 15 10 C 0.02 1.19 5.49 85.29 0.47 1.65 15 11 N -0.76 -42.80 11.49 21.84 0.25 -42.55 15 12 Si 0.99 39.27 29.56 68.60 2.03 41.30 15 13 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 14 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 15 H -0.25 -9.63 7.11 99.48 0.71 -8.92 15 16 C -0.29 -14.98 9.54 22.84 0.22 -14.76 15 17 H 0.05 1.45 8.14 -2.39 -0.02 1.43 15 18 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 19 H 0.04 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.08 2.32 8.10 -2.39 -0.02 2.30 15 21 H 0.07 2.17 8.10 -2.39 -0.02 2.15 15 22 H 0.12 4.68 8.06 -2.91 -0.02 4.65 15 23 H 0.14 6.06 8.06 -2.91 -0.02 6.04 15 24 H 0.28 14.08 8.29 -92.71 -0.77 13.31 15 25 H 0.10 4.97 8.06 -2.91 -0.02 4.95 15 Total: -1.00 -65.04 224.10 5.08 -59.96 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.16 Total: 14.85 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 3.13 Total: -41.06 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.24 Total: -75.05 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -65.04 5.08 -59.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371400.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.329 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds