Wall clock time and date at job start Mon Mar 30 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39017 * 119.62143 * 154.97866 * 3 2 1 5 5 C 1.40931 * 118.74724 * 179.72466 * 4 3 2 6 6 C 1.41501 * 120.98922 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00363 * 156.13818 * 6 5 4 8 8 C 1.40066 * 119.99798 * 336.13876 * 6 5 4 9 9 N 1.30721 * 120.00301 * 343.17620 * 8 6 5 10 10 Si 1.86798 * 120.00033 * 163.17473 * 8 6 5 11 11 H 1.48507 * 109.47162 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47389 * 119.99876 * 10 8 6 13 13 H 1.48503 * 109.47158 * 240.00241 * 10 8 6 14 14 C 1.41083 * 118.02558 * 359.97438 * 5 4 3 15 15 C 1.37944 * 119.08546 * 0.02562 * 14 5 4 16 16 N 1.31750 * 121.17788 * 0.02562 * 15 14 5 17 17 H 1.07996 * 120.62901 * 359.73743 * 4 3 2 18 18 H 0.96998 * 120.00192 * 180.02562 * 9 8 6 19 19 H 1.07997 * 120.45786 * 179.97438 * 14 5 4 20 20 H 1.08005 * 119.40756 * 179.97438 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2546 1.0960 -0.5111 5 6 4.6637 1.0797 -0.4967 6 6 5.4102 2.1689 -1.0052 7 1 6.4201 2.3386 -0.6621 8 6 4.8394 3.0270 -1.9537 9 7 3.7719 2.6571 -2.6112 10 14 5.6035 4.7002 -2.2791 11 1 6.7952 4.8775 -1.4108 12 1 6.0111 4.7896 -3.7042 13 1 4.6114 5.7641 -1.9802 14 6 5.3080 -0.0549 0.0399 15 6 4.5418 -1.0946 0.5245 16 7 3.2257 -1.0442 0.4933 17 1 2.7183 1.9436 -0.9116 18 1 3.3768 3.2512 -3.2683 19 1 6.3862 -0.1091 0.0701 20 1 5.0297 -1.9659 0.9361 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044371414.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:46 Heat of formation + Delta-G solvation = 45.502838 kcal Electronic energy + Delta-G solvation = -9049.111993 eV Core-core repulsion = 7210.404849 eV Total energy + Delta-G solvation = -1838.707144 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 174.049 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.62340 -35.66546 -34.33034 -30.99901 -30.10855 -26.20403 -23.04834 -21.88934 -18.72976 -16.55156 -15.61039 -14.70126 -14.47483 -13.64106 -13.45048 -12.84111 -12.27334 -12.01765 -11.88160 -11.50645 -11.35787 -11.06610 -10.43063 -10.23325 -9.62461 -8.37145 -8.27382 -7.90179 -7.07489 -4.81899 1.94955 2.59348 2.93858 2.98713 3.02345 3.41319 3.71397 3.80985 4.52077 4.68621 5.41777 5.86516 6.45829 6.58057 6.59465 6.87967 6.96129 7.11682 7.55399 7.77890 8.09376 8.28856 8.43967 8.50043 9.21443 9.84946 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.052228 B = 0.014910 C = 0.011954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.981562 B = 1877.507751 C = 2341.721678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.299 3.701 3 C 0.159 3.841 4 C -0.150 4.150 5 C 0.122 3.878 6 C -0.445 4.445 7 H 0.089 0.911 8 C 0.075 3.925 9 N -0.780 5.780 10 Si 0.916 3.084 11 H -0.257 1.257 12 H -0.271 1.271 13 H -0.269 1.269 14 C -0.260 4.260 15 C 0.112 3.888 16 N -0.551 5.551 17 H 0.135 0.865 18 H 0.288 0.712 19 H 0.110 0.890 20 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 1.923 0.547 4.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.016 4.016 3 C 0.028 3.972 4 C -0.176 4.176 5 C 0.114 3.886 6 C -0.475 4.475 7 H 0.107 0.893 8 C -0.146 4.146 9 N -0.404 5.404 10 Si 0.740 3.260 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.194 1.194 14 C -0.283 4.283 15 C -0.045 4.045 16 N -0.268 5.268 17 H 0.153 0.847 18 H 0.099 0.901 19 H 0.128 0.872 20 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.832 1.268 0.695 2.334 hybrid contribution 1.261 1.408 -0.650 1.999 sum 3.093 2.676 0.045 4.090 Atomic orbital electron populations 1.81047 1.12265 1.09578 1.10493 1.25642 0.92397 0.91655 0.91948 1.16187 0.84630 0.93931 1.02483 1.22239 0.95224 0.97997 1.02151 1.17744 0.91142 0.91440 0.88261 1.19706 1.00988 1.07620 1.19235 0.89270 1.26068 0.94291 1.00162 0.94075 1.69718 1.17777 1.36179 1.16748 0.86117 0.80282 0.80530 0.79111 1.18032 1.19644 1.19381 1.22031 0.99440 0.95764 1.11067 1.21871 0.88629 0.97226 0.96758 1.67233 1.10444 1.26394 1.22710 0.84733 0.90058 0.87220 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.43 18.54 41.83 0.78 -9.65 14 2 C 0.30 6.85 15.52 -22.48 -0.35 6.51 14 3 C 0.16 3.76 6.58 -85.17 -0.56 3.20 14 4 C -0.15 -3.64 8.47 -38.27 -0.32 -3.96 14 5 C 0.12 2.95 5.60 -106.56 -0.60 2.35 14 6 C -0.44 -10.50 9.12 -37.65 -0.34 -10.84 14 7 H 0.09 1.98 7.90 -52.49 -0.41 1.57 14 8 C 0.08 1.69 5.20 -17.34 -0.09 1.60 14 9 N -0.78 -18.42 10.92 55.55 0.61 -17.81 14 10 Si 0.92 16.81 29.59 -169.99 -5.03 11.78 14 11 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 12 H -0.27 -4.93 7.11 56.52 0.40 -4.53 14 13 H -0.27 -4.92 7.11 56.52 0.40 -4.51 14 14 C -0.26 -5.64 9.90 -38.61 -0.38 -6.02 14 15 C 0.11 2.34 11.15 -17.69 -0.20 2.14 14 16 N -0.55 -12.72 10.25 -11.33 -0.12 -12.83 14 17 H 0.14 3.35 6.20 -52.49 -0.33 3.02 14 18 H 0.29 6.16 8.29 -40.82 -0.34 5.82 14 19 H 0.11 2.13 8.06 -52.49 -0.42 1.71 14 20 H 0.13 2.26 8.06 -52.48 -0.42 1.83 14 LS Contribution 200.68 15.07 3.02 3.02 Total: -1.00 -25.55 200.68 -4.30 -29.85 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -0.72 Total: 0.67 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.84 Total: -5.02 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 1.27 Total: -40.30 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -25.55 -4.30 -29.85 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371414.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.356 kcal (2) G-P(sol) polarization free energy of solvation -25.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds