Wall clock time and date at job start Mon Mar 30 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39017 * 119.62143 * 154.97866 * 3 2 1 5 5 C 1.40931 * 118.74724 * 179.72466 * 4 3 2 6 6 C 1.41501 * 120.98922 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00363 * 156.13818 * 6 5 4 8 8 C 1.40066 * 119.99798 * 336.13876 * 6 5 4 9 9 N 1.30721 * 120.00301 * 343.17620 * 8 6 5 10 10 Si 1.86798 * 120.00033 * 163.17473 * 8 6 5 11 11 H 1.48507 * 109.47162 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47389 * 119.99876 * 10 8 6 13 13 H 1.48503 * 109.47158 * 240.00241 * 10 8 6 14 14 C 1.41083 * 118.02558 * 359.97438 * 5 4 3 15 15 C 1.37944 * 119.08546 * 0.02562 * 14 5 4 16 16 N 1.31750 * 121.17788 * 0.02562 * 15 14 5 17 17 H 1.07996 * 120.62901 * 359.73743 * 4 3 2 18 18 H 0.96998 * 120.00192 * 180.02562 * 9 8 6 19 19 H 1.07997 * 120.45786 * 179.97438 * 14 5 4 20 20 H 1.08005 * 119.40756 * 179.97438 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2546 1.0960 -0.5111 5 6 4.6637 1.0797 -0.4967 6 6 5.4102 2.1689 -1.0052 7 1 6.4201 2.3386 -0.6621 8 6 4.8394 3.0270 -1.9537 9 7 3.7719 2.6571 -2.6112 10 14 5.6035 4.7002 -2.2791 11 1 6.7952 4.8775 -1.4108 12 1 6.0111 4.7896 -3.7042 13 1 4.6114 5.7641 -1.9802 14 6 5.3080 -0.0549 0.0399 15 6 4.5418 -1.0946 0.5245 16 7 3.2257 -1.0442 0.4933 17 1 2.7183 1.9436 -0.9116 18 1 3.3768 3.2512 -3.2683 19 1 6.3862 -0.1091 0.0701 20 1 5.0297 -1.9659 0.9361 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044371414.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:46 Heat of formation + Delta-G solvation = 31.028399 kcal Electronic energy + Delta-G solvation = -9049.739652 eV Core-core repulsion = 7210.404849 eV Total energy + Delta-G solvation = -1839.334803 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 174.049 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.38614 -37.48964 -36.06510 -32.76628 -31.87393 -27.97266 -24.83854 -23.63376 -20.47648 -18.34689 -17.31252 -16.40800 -16.15964 -15.36492 -15.26416 -14.43565 -14.05965 -13.83206 -13.64301 -13.16210 -12.95450 -12.68617 -12.01275 -11.91760 -11.29357 -10.15037 -10.05491 -9.66603 -8.77316 -6.61198 0.14413 0.90334 1.43917 1.51372 1.58252 1.59682 2.03788 2.18943 2.77033 2.88316 3.63816 4.25282 4.75449 4.83024 4.85950 5.16633 5.17621 5.36409 5.80794 6.03262 6.30037 6.48000 6.67833 6.73570 7.45783 8.17890 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.052228 B = 0.014910 C = 0.011954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.981562 B = 1877.507751 C = 2341.721678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.302 3.698 3 C 0.154 3.846 4 C -0.167 4.167 5 C 0.096 3.904 6 C -0.468 4.468 7 H 0.098 0.902 8 C 0.038 3.962 9 N -0.812 5.812 10 Si 0.988 3.012 11 H -0.250 1.250 12 H -0.266 1.266 13 H -0.268 1.268 14 C -0.260 4.260 15 C 0.114 3.886 16 N -0.564 5.564 17 H 0.121 0.879 18 H 0.295 0.705 19 H 0.134 0.866 20 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 2.138 0.689 5.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.014 4.014 3 C 0.022 3.978 4 C -0.194 4.194 5 C 0.088 3.912 6 C -0.499 4.499 7 H 0.116 0.884 8 C -0.181 4.181 9 N -0.437 5.437 10 Si 0.808 3.192 11 H -0.173 1.173 12 H -0.191 1.191 13 H -0.193 1.193 14 C -0.283 4.283 15 C -0.042 4.042 16 N -0.281 5.281 17 H 0.139 0.861 18 H 0.106 0.894 19 H 0.151 0.849 20 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.982 1.463 0.845 3.427 hybrid contribution 0.916 1.276 -0.683 1.713 sum 3.898 2.740 0.162 4.767 Atomic orbital electron populations 1.81032 1.12217 1.09732 1.10620 1.25632 0.92363 0.91531 0.91854 1.16244 0.84805 0.94084 1.02638 1.22163 0.95690 0.98086 1.03455 1.18132 0.91312 0.92708 0.89059 1.20035 1.01629 1.08343 1.19848 0.88364 1.26923 0.94469 1.03339 0.93342 1.69768 1.18980 1.37657 1.17316 0.85047 0.79433 0.75626 0.79082 1.17283 1.19106 1.19282 1.22331 1.00773 0.95063 1.10151 1.22519 0.87880 0.98247 0.95538 1.67323 1.11606 1.26098 1.23047 0.86130 0.89370 0.84860 0.80829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.78 18.54 19.00 0.35 -20.43 14 2 C 0.30 13.80 15.52 88.33 1.37 15.17 14 3 C 0.15 7.25 6.58 40.41 0.27 7.51 14 4 C -0.17 -8.20 8.47 23.12 0.20 -8.00 14 5 C 0.10 4.59 5.60 -21.12 -0.12 4.47 14 6 C -0.47 -21.83 9.12 23.52 0.21 -21.62 14 7 H 0.10 4.25 7.90 -2.91 -0.02 4.23 14 8 C 0.04 1.67 5.20 85.30 0.44 2.11 14 9 N -0.81 -38.51 10.92 21.84 0.24 -38.27 14 10 Si 0.99 33.58 29.59 68.60 2.03 35.61 14 11 H -0.25 -8.13 7.11 99.48 0.71 -7.42 14 12 H -0.27 -8.78 7.11 99.48 0.71 -8.07 14 13 H -0.27 -9.00 7.11 99.48 0.71 -8.30 14 14 C -0.26 -10.85 9.90 22.90 0.23 -10.62 14 15 C 0.11 4.50 11.15 84.64 0.94 5.44 14 16 N -0.56 -25.28 10.25 -189.75 -1.94 -27.22 14 17 H 0.12 6.17 6.20 -2.91 -0.02 6.15 14 18 H 0.30 12.64 8.29 -92.71 -0.77 11.87 14 19 H 0.13 4.82 8.06 -2.91 -0.02 4.80 14 20 H 0.17 5.28 8.06 -2.91 -0.02 5.25 14 Total: -1.00 -52.83 200.68 5.48 -47.35 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.26 Total: 8.51 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 3.54 Total: -5.54 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.35 Total: -85.92 kcal Atomic # 14 Polarization: 33.58 SS G_CDS: 2.03 Total: 35.61 kcal Total: -52.83 5.48 -47.35 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371414.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.374 kcal (2) G-P(sol) polarization free energy of solvation -52.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds