Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.34179 * 125.67755 * 80.55383 * 3 2 1 5 5 C 1.30517 * 109.80140 * 179.97438 * 4 3 2 6 6 N 1.34705 * 108.34421 * 359.97438 * 5 4 3 7 7 C 1.46494 * 126.72927 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47066 * 125.00715 * 7 6 5 9 9 H 1.07988 * 119.99508 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99988 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99984 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00067 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46590 * 89.99832 * 12 10 8 14 14 H 1.48493 * 109.47215 * 210.00085 * 12 10 8 15 15 H 1.48502 * 109.46922 * 330.00154 * 12 10 8 16 16 N 1.31723 * 125.67021 * 260.24506 * 3 2 1 17 17 H 1.07997 * 125.82812 * 180.02562 * 5 4 3 18 18 H 1.09003 * 109.47223 * 245.00437 * 7 6 5 19 19 H 1.09000 * 109.47431 * 5.00443 * 7 6 5 20 20 H 0.97008 * 120.00048 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3506 -0.1779 -1.0752 5 6 4.6060 -0.1182 -0.7231 6 7 4.6639 0.1036 0.6043 7 6 5.8746 0.2399 1.4178 8 6 5.8305 1.5454 2.1694 9 1 4.9854 2.2074 2.0524 10 6 6.8691 1.8944 3.0063 11 7 7.8980 1.0878 3.1492 12 14 6.8148 3.5130 3.9374 13 1 6.1541 3.3062 5.2511 14 1 8.1985 4.0075 4.1515 15 1 6.0486 4.5117 3.1496 16 7 3.3360 0.1823 1.0546 17 1 5.4536 -0.2271 -1.3834 18 1 5.9306 -0.5859 2.1271 19 1 6.7513 0.2228 0.7703 20 1 8.6286 1.3332 3.7383 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060060273.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = 116.865952 kcal Electronic energy + Delta-G solvation = -9489.488284 eV Core-core repulsion = 7495.712377 eV Total energy + Delta-G solvation = -1993.775908 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.055 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.64785 -36.41770 -34.25629 -32.28142 -31.04239 -27.90561 -24.54976 -22.66025 -21.37522 -18.16771 -16.84872 -15.78367 -15.25252 -14.75909 -14.24336 -13.31490 -13.14242 -12.68134 -12.44856 -12.33773 -11.65279 -11.15136 -10.95607 -10.48568 -10.03350 -9.71997 -9.45614 -9.02901 -8.71038 -6.43271 -4.49990 1.64090 2.54997 2.59178 2.93212 3.15417 3.22186 3.26895 3.80436 3.83783 4.18635 4.92674 5.00963 5.43794 6.19578 6.44183 6.65281 6.85694 7.30106 7.51040 7.60017 7.65857 8.31039 8.57129 9.17782 10.65864 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.063453 B = 0.010639 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.168980 B = 2631.259285 C = 2945.475481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.329 3.671 3 C 0.252 3.748 4 N -0.529 5.529 5 C 0.247 3.753 6 N -0.319 5.319 7 C 0.249 3.751 8 C -0.540 4.540 9 H 0.071 0.929 10 C 0.067 3.933 11 N -0.891 5.891 12 Si 0.910 3.090 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.271 1.271 16 N -0.242 5.242 17 H 0.224 0.776 18 H 0.056 0.944 19 H 0.069 0.931 20 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -1.352 -4.485 4.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C 0.010 3.990 3 C -0.029 4.029 4 N -0.259 5.259 5 C -0.049 4.049 6 N -0.109 5.109 7 C 0.131 3.869 8 C -0.578 4.578 9 H 0.089 0.911 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.737 3.263 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.196 1.196 16 N -0.079 5.079 17 H 0.241 0.759 18 H 0.074 0.926 19 H 0.086 0.914 20 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.835 -1.303 -3.952 5.035 hybrid contribution 0.978 0.820 0.509 1.375 sum -1.857 -0.482 -3.443 3.941 Atomic orbital electron populations 1.81216 1.10589 1.08443 1.07190 1.23039 0.89290 0.93397 0.93286 1.18166 0.88297 1.07328 0.89101 1.70408 1.00729 1.25350 1.29392 1.25946 0.95935 0.97542 0.85509 1.51391 1.06140 1.45781 1.07624 1.20076 0.75831 0.99963 0.90995 1.21180 1.06406 1.03115 1.27139 0.91069 1.24923 0.94678 0.98027 0.96075 1.69898 1.08559 1.36799 1.37543 0.86280 0.77487 0.82419 0.80117 1.20161 1.20819 1.19583 1.78497 0.88520 1.20374 1.20489 0.75939 0.92573 0.91366 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.09 18.54 41.83 0.78 -6.32 14 2 C 0.33 5.89 16.01 -22.47 -0.36 5.53 14 3 C 0.25 4.75 7.82 -158.51 -1.24 3.52 14 4 N -0.53 -9.37 11.21 -13.78 -0.15 -9.52 14 5 C 0.25 3.98 12.61 -90.67 -1.14 2.84 14 6 N -0.32 -6.30 3.69 -63.82 -0.24 -6.53 14 7 C 0.25 5.44 6.30 -5.19 -0.03 5.40 14 8 C -0.54 -13.61 9.26 -34.44 -0.32 -13.93 14 9 H 0.07 1.87 7.81 -52.49 -0.41 1.46 14 10 C 0.07 1.70 5.46 -17.82 -0.10 1.61 14 11 N -0.89 -23.26 13.29 55.43 0.74 -22.53 14 12 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 14 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 15 H -0.27 -5.99 7.11 56.52 0.40 -5.58 14 16 N -0.24 -5.07 12.60 30.96 0.39 -4.68 14 17 H 0.22 2.43 8.06 -52.49 -0.42 2.01 14 18 H 0.06 1.30 8.14 -51.93 -0.42 0.88 14 19 H 0.07 1.40 8.09 -51.93 -0.42 0.98 14 20 H 0.27 6.70 8.31 -40.82 -0.34 6.36 14 LS Contribution 208.04 15.07 3.14 3.14 Total: -1.00 -27.38 208.04 -4.37 -31.75 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -0.81 Total: -5.31 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.19 Total: 4.96 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.51 Total: -49.58 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -27.38 -4.37 -31.75 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060060273.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.617 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds