Wall clock time and date at job start Mon Mar 30 2020 02:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36597 * 126.69073 * 2 1 4 4 C 1.43206 * 125.73905 * 0.24432 * 3 2 1 5 5 N 3.54379 * 90.66156 * 0.14351 * 2 1 3 6 6 N 1.34491 * 108.52101 * 179.97438 * 3 2 1 7 7 N 1.28711 * 109.80394 * 0.02562 * 6 3 2 8 8 N 1.36193 * 126.68570 * 179.97438 * 2 1 3 9 9 C 1.37493 * 126.69760 * 359.97438 * 8 2 1 10 10 H 1.08003 * 120.00249 * 354.20971 * 9 8 2 11 11 C 1.39046 * 120.00172 * 174.20552 * 9 8 2 12 12 N 1.31240 * 119.99629 * 5.89370 * 11 9 8 13 13 Si 1.86796 * 120.00299 * 185.89242 * 11 9 8 14 14 H 1.48495 * 109.46934 * 94.98243 * 13 11 9 15 15 H 1.48501 * 109.47283 * 214.98055 * 13 11 9 16 16 H 1.48502 * 109.47276 * 334.98137 * 13 11 9 17 17 H 1.08995 * 109.47140 * 90.02764 * 1 2 3 18 18 H 1.09005 * 109.46994 * 210.02332 * 1 2 3 19 19 H 1.08995 * 109.47388 * 330.02541 * 1 2 3 20 20 H 0.97001 * 119.99550 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3232 1.0953 0.0000 4 6 1.8909 2.4606 0.0050 5 7 1.5479 3.5435 0.0089 6 7 3.6010 0.6760 0.0006 7 7 3.6377 -0.6106 0.0004 8 7 2.3206 -1.0922 0.0005 9 6 1.9275 -2.4097 0.0016 10 1 0.8814 -2.6610 0.0965 11 6 2.8766 -3.4186 -0.1196 12 7 4.1547 -3.1206 -0.1186 13 14 2.3325 -5.1980 -0.2838 14 1 2.2736 -5.5669 -1.7210 15 1 3.3033 -6.0789 0.4140 16 1 0.9881 -5.3628 0.3251 17 1 -0.3633 -0.0005 -1.0276 18 1 -0.3633 -0.8898 0.5142 19 1 -0.3634 0.8902 0.5134 20 1 4.8168 -3.8245 -0.2028 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295528.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:25 Heat of formation + Delta-G solvation = 108.095373 kcal Electronic energy + Delta-G solvation = -9800.286184 eV Core-core repulsion = 7806.129956 eV Total energy + Delta-G solvation = -1994.156228 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.055 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.50159 -35.71845 -34.39484 -32.31785 -30.69543 -26.94160 -25.84236 -21.99274 -20.87780 -18.36614 -16.47659 -15.70235 -14.66968 -14.34819 -13.24553 -12.73688 -12.56707 -12.46379 -12.21454 -11.94797 -11.76118 -11.52199 -11.31780 -10.73713 -10.19870 -10.08415 -9.59710 -8.94456 -7.67084 -7.07588 -4.89348 2.44284 2.83396 2.85328 2.91796 3.19706 3.42515 3.49193 4.17350 4.47324 4.57886 4.96570 5.74545 5.84913 6.13659 6.30272 6.50979 6.60295 6.81651 7.18187 7.61900 8.18419 8.33638 8.76957 9.73571 9.89406 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.083461 B = 0.012922 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.406623 B = 2166.306999 C = 2484.408257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.048 4.048 3 C -0.029 4.029 4 C 0.331 3.669 5 N -0.468 5.468 6 N -0.276 5.276 7 N -0.076 5.076 8 N -0.135 5.135 9 C -0.304 4.304 10 H 0.130 0.870 11 C 0.047 3.953 12 N -0.748 5.748 13 Si 0.947 3.053 14 H -0.265 1.265 15 H -0.271 1.271 16 H -0.258 1.258 17 H 0.065 0.935 18 H 0.067 0.933 19 H 0.065 0.935 20 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 -4.690 -0.189 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.189 4.189 3 C -0.177 4.177 4 C 0.016 3.984 5 N -0.149 5.149 6 N -0.140 5.140 7 N -0.053 5.053 8 N 0.098 4.902 9 C -0.441 4.441 10 H 0.147 0.853 11 C -0.175 4.175 12 N -0.373 5.373 13 Si 0.769 3.231 14 H -0.190 1.190 15 H -0.195 1.195 16 H -0.182 1.182 17 H 0.083 0.917 18 H 0.086 0.914 19 H 0.084 0.916 20 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.211 -3.487 -0.186 5.470 hybrid contribution -0.982 -1.120 -0.067 1.491 sum -5.193 -4.607 -0.253 6.947 Atomic orbital electron populations 1.19995 0.87757 1.02303 1.01874 1.20931 0.94251 0.86331 1.17355 1.15880 0.90769 0.86078 1.24950 1.24225 0.92056 0.90857 0.91243 1.81106 1.09500 1.10809 1.13494 1.74477 1.17443 1.06852 1.15216 1.82592 0.95271 0.99219 1.28235 1.46434 1.05453 1.05504 1.32798 1.20346 0.96021 0.77287 1.50400 0.85296 1.25894 0.94645 1.02373 0.94593 1.70118 1.00691 1.35846 1.30653 0.85587 0.79600 0.78362 0.79511 1.19029 1.19549 1.18172 0.91675 0.91429 0.91568 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 9.90 36.01 0.36 -0.66 14 2 C -0.05 -1.09 7.02 -81.25 -0.57 -1.66 14 3 C -0.03 -0.69 6.87 -85.37 -0.59 -1.28 14 4 C 0.33 7.25 15.41 -22.47 -0.35 6.90 14 5 N -0.47 -10.13 18.54 41.84 0.78 -9.36 14 6 N -0.28 -7.31 12.38 31.89 0.39 -6.91 14 7 N -0.08 -2.11 11.70 60.35 0.71 -1.41 14 8 N -0.13 -3.40 3.76 -7.52 -0.03 -3.43 14 9 C -0.30 -7.06 10.02 -14.71 -0.15 -7.20 14 10 H 0.13 2.59 7.15 -52.48 -0.38 2.22 14 11 C 0.05 1.05 5.50 -17.50 -0.10 0.96 14 12 N -0.75 -18.54 11.89 55.50 0.66 -17.88 14 13 Si 0.95 16.37 29.56 -169.99 -5.02 11.34 14 14 H -0.27 -4.56 7.11 56.52 0.40 -4.16 14 15 H -0.27 -4.66 7.11 56.52 0.40 -4.26 14 16 H -0.26 -4.22 7.11 56.52 0.40 -3.82 14 17 H 0.06 1.00 8.14 -51.93 -0.42 0.58 14 18 H 0.07 1.04 7.44 -51.93 -0.39 0.66 14 19 H 0.07 1.02 7.90 -51.93 -0.41 0.61 14 20 H 0.29 6.40 8.30 -40.82 -0.34 6.06 14 LS Contribution 202.79 15.07 3.06 3.06 Total: -1.00 -28.06 202.79 -1.58 -29.64 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -0.73 Total: -2.11 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.39 Total: -2.94 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 2.51 Total: -38.99 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -5.02 Total: 11.34 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -28.06 -1.58 -29.64 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295528.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.736 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds