Wall clock time and date at job start Mon Mar 30 2020 02:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38666 * 120.41498 * 100.00283 * 12 9 7 14 14 C 1.38629 * 118.41700 * 179.97438 * 13 12 9 15 15 C 1.38224 * 119.16382 * 0.02562 * 14 13 12 16 16 N 1.31856 * 120.76158 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72459 * 359.71314 * 16 15 14 18 18 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 19 19 H 1.00908 * 110.99828 * 296.04513 * 11 9 7 20 20 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 21 21 H 1.07996 * 120.79321 * 359.97438 * 13 12 9 22 22 H 1.08001 * 120.41706 * 180.02562 * 14 13 12 23 23 H 1.08003 * 119.62065 * 179.97438 * 15 14 13 24 24 H 1.08001 * 119.61597 * 180.30791 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 6 4.4442 -3.2072 -1.1777 14 6 4.8986 -4.5161 -1.1301 15 6 4.9071 -5.1826 0.0808 16 7 4.4903 -4.5874 1.1811 17 6 4.0572 -3.3416 1.1743 18 1 -0.4850 0.8400 -0.0004 19 1 3.7313 0.4701 1.1921 20 1 3.6769 -0.9604 2.0388 21 1 4.4258 -2.6620 -2.1097 22 1 5.2416 -5.0088 -2.0279 23 1 5.2591 -6.2026 0.1263 24 1 3.7283 -2.8859 2.0966 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071495357.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:59 Heat of formation + Delta-G solvation = 35.404697 kcal Electronic energy + Delta-G solvation = -10133.542084 eV Core-core repulsion = 8239.774095 eV Total energy + Delta-G solvation = -1893.767989 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.54471 -35.32936 -32.13102 -31.64253 -29.85997 -26.28091 -23.47498 -22.88637 -20.29835 -17.18644 -16.63045 -15.82545 -15.14868 -14.40311 -14.11989 -13.25343 -13.08420 -12.63089 -12.44766 -11.79112 -11.64907 -10.92688 -10.69261 -10.39665 -9.69558 -9.21424 -8.87556 -8.79870 -8.36559 -7.58925 -6.30260 -4.35253 1.76109 1.91827 3.08513 3.22438 3.23256 4.16536 4.45139 4.98413 5.00129 5.34855 5.47880 5.58330 5.74171 6.00143 6.17208 6.29595 6.64278 6.66897 7.15446 7.29810 7.39405 7.95794 8.17837 8.39334 8.55796 8.76010 9.27754 10.82173 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.069623 B = 0.013011 C = 0.012695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.072149 B = 2151.465923 C = 2204.991297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.075 3.925 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.210 3.790 10 H 0.052 0.948 11 N -0.849 5.849 12 C -0.067 4.067 13 C -0.084 4.084 14 C -0.176 4.176 15 C 0.066 3.934 16 N -0.490 5.490 17 C 0.104 3.896 18 H 0.268 0.732 19 H 0.319 0.681 20 H 0.332 0.668 21 H 0.128 0.872 22 H 0.125 0.875 23 H 0.144 0.856 24 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.011 -3.593 -1.113 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.100 3.900 10 H 0.070 0.930 11 N -0.383 5.383 12 C -0.069 4.069 13 C -0.110 4.110 14 C -0.196 4.196 15 C -0.091 4.091 16 N -0.199 5.199 17 C -0.053 4.053 18 H 0.078 0.922 19 H 0.136 0.864 20 H 0.144 0.856 21 H 0.146 0.854 22 H 0.143 0.857 23 H 0.162 0.838 24 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.585 -4.120 -0.603 9.541 hybrid contribution -0.851 1.548 -0.706 1.902 sum 7.734 -2.572 -1.310 8.255 Atomic orbital electron populations 1.69891 1.06233 1.27341 1.48864 1.25032 0.94865 0.99073 0.93991 0.86990 0.80320 0.83703 0.78726 1.19990 1.21626 1.18369 1.21595 0.89378 0.95058 1.52913 0.90595 1.18448 0.93759 0.86862 0.90909 0.93019 1.59729 1.66920 1.05773 1.05865 1.21013 0.94187 0.98267 0.93471 1.21436 0.96321 0.94758 0.98500 1.21976 1.02611 0.95804 0.99191 1.22494 0.98425 0.99625 0.88527 1.67607 1.10394 1.11028 1.30865 1.22464 0.95450 0.89187 0.98156 0.92237 0.86448 0.85563 0.85378 0.85718 0.83833 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.96 55.43 0.77 -25.37 14 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 14 3 Si 0.87 20.35 24.61 -169.99 -4.18 16.17 14 4 H -0.27 -6.11 7.01 56.52 0.40 -5.71 14 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 14 6 H -0.26 -5.84 6.54 56.52 0.37 -5.47 14 7 C -0.55 -14.89 9.29 -34.44 -0.32 -15.21 14 8 H 0.08 2.29 7.98 -52.49 -0.42 1.87 14 9 C 0.21 4.85 2.50 -70.01 -0.17 4.67 14 10 H 0.05 1.22 7.09 -51.93 -0.37 0.85 14 11 N -0.85 -18.24 8.98 -6.65 -0.06 -18.30 14 12 C -0.07 -1.40 4.91 -104.49 -0.51 -1.92 14 13 C -0.08 -1.54 9.82 -39.28 -0.39 -1.92 14 14 C -0.18 -2.78 10.11 -39.44 -0.40 -3.18 14 15 C 0.07 1.09 11.18 -17.55 -0.20 0.89 14 16 N -0.49 -9.41 10.36 -13.25 -0.14 -9.54 14 17 C 0.10 2.11 10.46 -17.55 -0.18 1.93 14 18 H 0.27 7.38 8.31 -40.82 -0.34 7.04 14 19 H 0.32 6.95 4.30 -39.29 -0.17 6.79 14 20 H 0.33 6.73 7.36 -39.29 -0.29 6.44 14 21 H 0.13 2.14 8.06 -52.49 -0.42 1.71 14 22 H 0.12 1.52 8.06 -52.49 -0.42 1.10 14 23 H 0.14 1.84 8.06 -52.48 -0.42 1.42 14 24 H 0.15 2.90 6.67 -52.49 -0.35 2.55 14 LS Contribution 208.19 15.07 3.14 3.14 Total: -1.00 -29.72 208.19 -4.77 -34.50 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -2.04 Total: 12.19 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.27 Total: -12.78 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.58 Total: -53.21 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.18 Total: 16.17 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -29.72 -4.77 -34.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495357.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.900 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds