Wall clock time and date at job start Mon Mar 30 2020 02:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38666 * 120.41498 * 100.00283 * 12 9 7 14 14 C 1.38629 * 118.41700 * 179.97438 * 13 12 9 15 15 C 1.38224 * 119.16382 * 0.02562 * 14 13 12 16 16 N 1.31856 * 120.76158 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72459 * 359.71314 * 16 15 14 18 18 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 19 19 H 1.00908 * 110.99828 * 296.04513 * 11 9 7 20 20 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 21 21 H 1.07996 * 120.79321 * 359.97438 * 13 12 9 22 22 H 1.08001 * 120.41706 * 180.02562 * 14 13 12 23 23 H 1.08003 * 119.62065 * 179.97438 * 15 14 13 24 24 H 1.08001 * 119.61597 * 180.30791 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 6 4.4442 -3.2072 -1.1777 14 6 4.8986 -4.5161 -1.1301 15 6 4.9071 -5.1826 0.0808 16 7 4.4903 -4.5874 1.1811 17 6 4.0572 -3.3416 1.1743 18 1 -0.4850 0.8400 -0.0004 19 1 3.7313 0.4701 1.1921 20 1 3.6769 -0.9604 2.0388 21 1 4.4258 -2.6620 -2.1097 22 1 5.2416 -5.0088 -2.0279 23 1 5.2591 -6.2026 0.1263 24 1 3.7283 -2.8859 2.0966 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071495357.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:59 Heat of formation + Delta-G solvation = 12.701111 kcal Electronic energy + Delta-G solvation = -10134.526585 eV Core-core repulsion = 8239.774095 eV Total energy + Delta-G solvation = -1894.752491 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.97946 -37.10476 -34.13005 -33.10086 -31.36816 -28.22745 -25.16454 -24.31099 -21.95947 -19.17779 -18.13230 -17.41484 -16.85138 -16.05471 -15.72548 -14.87754 -14.69184 -14.38362 -13.83181 -13.59846 -13.35715 -12.83802 -12.36919 -12.09888 -11.67575 -10.94535 -10.62370 -10.27131 -9.86172 -9.37943 -8.42695 -6.52906 0.36540 0.48860 1.24723 1.32460 1.41916 2.19598 2.89371 3.03398 3.66359 3.84654 4.10043 4.20026 4.32334 4.38897 4.75458 4.85129 5.06779 5.28383 5.33208 5.63027 5.88135 6.01130 6.33067 6.50971 6.63705 7.12907 7.15884 8.73565 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.069623 B = 0.013011 C = 0.012695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.072149 B = 2151.465923 C = 2204.991297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.019 3.981 3 Si 0.942 3.058 4 H -0.255 1.255 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.552 4.552 8 H 0.028 0.972 9 C 0.219 3.781 10 H 0.050 0.950 11 N -0.839 5.839 12 C -0.100 4.100 13 C -0.094 4.094 14 C -0.162 4.162 15 C 0.068 3.932 16 N -0.508 5.508 17 C 0.088 3.912 18 H 0.270 0.730 19 H 0.319 0.681 20 H 0.338 0.662 21 H 0.142 0.858 22 H 0.170 0.830 23 H 0.186 0.814 24 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 -3.900 -1.732 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.180 1.180 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.592 4.592 8 H 0.047 0.953 9 C 0.108 3.892 10 H 0.068 0.932 11 N -0.372 5.372 12 C -0.102 4.102 13 C -0.121 4.121 14 C -0.181 4.181 15 C -0.089 4.089 16 N -0.217 5.217 17 C -0.068 4.068 18 H 0.079 0.921 19 H 0.135 0.865 20 H 0.151 0.849 21 H 0.159 0.841 22 H 0.188 0.812 23 H 0.202 0.798 24 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.645 -4.435 -1.206 11.595 hybrid contribution -1.488 1.459 -0.549 2.155 sum 9.158 -2.977 -1.755 9.788 Atomic orbital electron populations 1.70047 1.08267 1.28523 1.50728 1.25923 0.95588 1.03140 0.93449 0.85899 0.79223 0.78429 0.79835 1.17971 1.21786 1.16791 1.21799 0.91789 0.93241 1.52358 0.95348 1.18244 0.90865 0.88803 0.91257 0.93221 1.59689 1.66274 1.05619 1.05646 1.20938 0.96718 0.97502 0.95053 1.21756 0.96040 0.96182 0.98076 1.22421 1.00499 0.94489 1.00702 1.23274 0.96552 1.01147 0.87969 1.67639 1.11107 1.10488 1.32507 1.22413 0.96465 0.89988 0.97954 0.92080 0.86529 0.84924 0.84051 0.81230 0.79758 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.78 13.96 21.45 0.30 -56.48 14 2 C 0.02 1.04 5.47 84.65 0.46 1.50 14 3 Si 0.94 41.71 24.61 68.60 1.69 43.40 14 4 H -0.25 -10.46 7.01 99.48 0.70 -9.76 14 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 14 6 H -0.24 -10.16 6.54 99.48 0.65 -9.51 14 7 C -0.55 -30.67 9.29 25.60 0.24 -30.44 14 8 H 0.03 1.79 7.98 -2.92 -0.02 1.77 14 9 C 0.22 10.04 2.50 43.43 0.11 10.15 14 10 H 0.05 2.29 7.09 -2.39 -0.02 2.27 14 11 N -0.84 -35.17 8.98 -174.94 -1.57 -36.74 14 12 C -0.10 -4.14 4.91 -19.78 -0.10 -4.23 14 13 C -0.09 -3.27 9.82 22.47 0.22 -3.05 14 14 C -0.16 -4.51 10.11 22.36 0.23 -4.29 14 15 C 0.07 2.00 11.18 84.69 0.95 2.94 14 16 N -0.51 -18.76 10.36 -195.84 -2.03 -20.78 14 17 C 0.09 3.54 10.46 84.67 0.89 4.43 14 18 H 0.27 15.24 8.31 -92.71 -0.77 14.47 14 19 H 0.32 13.26 4.30 -89.69 -0.39 12.87 14 20 H 0.34 13.60 7.36 -89.69 -0.66 12.94 14 21 H 0.14 4.42 8.06 -2.91 -0.02 4.40 14 22 H 0.17 3.19 8.06 -2.91 -0.02 3.17 14 23 H 0.19 3.83 8.06 -2.91 -0.02 3.81 14 24 H 0.14 5.71 6.67 -2.91 -0.02 5.69 14 Total: -1.00 -65.16 208.19 1.49 -63.67 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.11 Total: 29.92 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 2.99 Total: -22.98 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -3.30 Total: -114.00 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.69 Total: 43.40 kcal Total: -65.16 1.49 -63.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495357.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.372 kcal (2) G-P(sol) polarization free energy of solvation -65.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds