Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.38673 * 120.41741 * 259.72396 * 12 9 7 14 14 C 1.38637 * 118.41527 * 179.78421 * 13 12 9 15 15 C 1.38218 * 119.16115 * 0.50968 * 14 13 12 16 16 N 1.31855 * 120.76806 * 359.73037 * 15 14 13 17 17 C 1.31890 * 121.72551 * 359.97438 * 16 15 14 18 18 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 19 19 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 20 20 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 21 21 H 1.07990 * 120.78973 * 0.02562 * 13 12 9 22 22 H 1.07996 * 120.41629 * 180.21435 * 14 13 12 23 23 H 1.07998 * 119.61953 * 179.74685 * 15 14 13 24 24 H 1.07990 * 119.61759 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 7 4.0016 -0.5018 -1.1982 12 6 4.0138 -2.6149 0.0010 13 6 4.4485 -3.2060 1.1777 14 6 4.8979 -4.5167 1.1308 15 6 4.9078 -5.1823 -0.0805 16 7 4.4915 -4.5868 -1.1809 17 6 4.0520 -3.3433 -1.1727 18 1 -0.4850 0.8401 -0.0004 19 1 5.0082 -0.4317 -1.1893 20 1 3.6784 -0.9594 -2.0374 21 1 4.4336 -2.6597 2.1091 22 1 5.2405 -5.0097 2.0285 23 1 5.2602 -6.2021 -0.1263 24 1 3.7187 -2.8890 -2.0939 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071495358.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = 31.604504 kcal Electronic energy + Delta-G solvation = -10124.642943 eV Core-core repulsion = 8230.710165 eV Total energy + Delta-G solvation = -1893.932778 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.67139 -35.24271 -32.04815 -31.72862 -29.74069 -26.45951 -23.38840 -22.93867 -20.25699 -17.01595 -16.67245 -15.72451 -15.01582 -14.44372 -14.00793 -13.44656 -13.29251 -12.56444 -12.43462 -11.81439 -11.56637 -10.75033 -10.53010 -10.00904 -9.46723 -9.21576 -8.99154 -8.59268 -8.32277 -7.75504 -6.07018 -4.19044 1.62514 1.80220 3.52974 3.57476 3.69816 4.31777 4.59396 4.88681 5.16238 5.26704 5.47613 5.55246 5.66122 5.84194 6.04154 6.24704 6.55208 6.64265 6.99312 7.20215 7.49924 8.04524 8.22500 8.42752 8.59006 8.91698 9.54809 11.02162 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.068932 B = 0.013038 C = 0.012694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.097019 B = 2147.122309 C = 2205.193120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.083 3.917 3 Si 0.939 3.061 4 H -0.279 1.279 5 H -0.318 1.318 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.219 3.781 10 H 0.052 0.948 11 N -0.840 5.840 12 C -0.114 4.114 13 C -0.081 4.081 14 C -0.175 4.175 15 C 0.068 3.932 16 N -0.488 5.488 17 C 0.094 3.906 18 H 0.265 0.735 19 H 0.312 0.688 20 H 0.336 0.664 21 H 0.130 0.870 22 H 0.125 0.875 23 H 0.145 0.855 24 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.768 -4.638 1.054 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.122 4.122 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.248 1.248 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.089 0.911 9 C 0.109 3.891 10 H 0.070 0.930 11 N -0.370 5.370 12 C -0.118 4.118 13 C -0.107 4.107 14 C -0.195 4.195 15 C -0.090 4.090 16 N -0.197 5.197 17 C -0.063 4.063 18 H 0.074 0.926 19 H 0.123 0.877 20 H 0.150 0.850 21 H 0.147 0.853 22 H 0.143 0.857 23 H 0.163 0.837 24 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.200 -4.371 0.514 10.198 hybrid contribution 0.723 0.297 0.647 1.015 sum 9.923 -4.074 1.161 10.790 Atomic orbital electron populations 1.69955 1.06833 1.27519 1.48990 1.25029 0.94622 1.00146 0.92366 0.85830 0.78305 0.80624 0.78146 1.20514 1.24756 1.20008 1.20720 0.87020 0.94668 1.53586 0.91122 1.18689 0.96535 0.83206 0.90629 0.92979 1.59364 1.13094 1.58397 1.06099 1.22246 0.94738 1.01291 0.93574 1.21524 0.95962 0.94639 0.98607 1.22041 1.02389 0.95891 0.99188 1.22521 0.98322 0.99625 0.88482 1.67601 1.10193 1.10958 1.30948 1.22516 0.95920 0.89624 0.98278 0.92565 0.87659 0.85015 0.85253 0.85659 0.83750 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.52 14 2 C 0.08 2.37 5.47 -17.82 -0.10 2.27 14 3 Si 0.94 23.39 26.03 -169.99 -4.42 18.97 14 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 14 5 H -0.32 -8.02 7.11 56.52 0.40 -7.62 14 6 H -0.27 -6.60 6.54 56.52 0.37 -6.23 14 7 C -0.52 -14.34 9.29 -34.44 -0.32 -14.66 14 8 H 0.07 2.16 7.98 -52.49 -0.42 1.74 14 9 C 0.22 4.91 2.36 -70.02 -0.17 4.75 14 10 H 0.05 1.20 7.09 -51.93 -0.37 0.83 14 11 N -0.84 -17.02 6.59 -6.65 -0.04 -17.06 14 12 C -0.11 -2.28 4.89 -104.48 -0.51 -2.79 14 13 C -0.08 -1.42 9.82 -39.27 -0.39 -1.81 14 14 C -0.18 -2.67 10.11 -39.44 -0.40 -3.07 14 15 C 0.07 1.07 11.18 -17.55 -0.20 0.88 14 16 N -0.49 -9.04 10.36 -13.26 -0.14 -9.18 14 17 C 0.09 1.81 10.46 -17.55 -0.18 1.62 14 18 H 0.26 7.59 8.31 -40.82 -0.34 7.25 14 19 H 0.31 5.42 9.06 -39.29 -0.36 5.06 14 20 H 0.34 6.49 7.37 -39.29 -0.29 6.20 14 21 H 0.13 2.08 8.06 -52.49 -0.42 1.66 14 22 H 0.13 1.48 8.06 -52.49 -0.42 1.05 14 23 H 0.15 1.79 8.06 -52.49 -0.42 1.37 14 24 H 0.15 2.75 6.68 -52.49 -0.35 2.40 14 LS Contribution 211.95 15.07 3.19 3.19 Total: -1.00 -31.13 211.95 -5.12 -36.24 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -2.22 Total: 7.16 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.26 Total: -12.81 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.59 Total: -52.76 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.42 Total: 18.97 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -31.13 -5.12 -36.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495358.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.849 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds