Wall clock time and date at job start Mon Mar 30 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86798 * 120.00003 * 2 1 4 4 H 1.48503 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47487 * 299.99950 * 3 2 1 6 6 H 1.48500 * 109.47595 * 60.00067 * 3 2 1 7 7 C 1.40300 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00036 * 171.38064 * 7 2 1 9 9 C 1.40074 * 120.00379 * 351.38228 * 7 2 1 10 10 C 1.34668 * 124.78756 * 170.54870 * 9 7 2 11 11 C 1.51100 * 110.59472 * 180.38204 * 10 9 7 12 12 H 1.08992 * 112.75583 * 220.40796 * 11 10 9 13 13 C 1.50994 * 109.56764 * 94.53222 * 11 10 9 14 14 C 1.30367 * 111.45533 * 233.09613 * 13 11 10 15 15 C 1.50995 * 111.19519 * 359.83290 * 14 13 11 16 16 C 1.54356 * 105.08802 * 15.73810 * 15 14 13 17 17 H 1.08994 * 114.79597 * 212.77130 * 16 15 14 18 18 C 1.51095 * 124.77752 * 350.85844 * 9 7 2 19 19 H 0.97002 * 119.99327 * 0.02562 * 1 2 3 20 20 H 1.08004 * 124.70455 * 0.35503 * 10 9 7 21 21 H 1.08001 * 124.27528 * 53.11991 * 13 11 10 22 22 H 1.08000 * 124.40394 * 179.85682 * 14 13 11 23 23 H 1.08995 * 110.31929 * 256.83253 * 15 14 13 24 24 H 1.09000 * 110.31442 * 134.64225 * 15 14 13 25 25 H 1.08992 * 110.32165 * 315.74127 * 18 9 7 26 26 H 1.08995 * 110.32215 * 77.95693 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8822 2.3965 1.2125 7 6 2.0084 -1.2150 0.0005 8 1 3.0793 -1.2204 -0.1396 9 6 1.3200 -2.4212 0.1828 10 6 1.8583 -3.6451 0.0218 11 6 0.8290 -4.7181 0.2908 12 1 1.2362 -5.5634 0.8453 13 6 0.1875 -5.1407 -1.0091 14 6 -1.1126 -5.0690 -0.9447 15 6 -1.5663 -4.5891 0.4132 16 6 -0.3052 -3.9868 1.0684 17 1 -0.2541 -4.1003 2.1512 18 6 -0.1332 -2.5324 0.5815 19 1 -0.4849 0.8401 -0.0004 20 1 2.8835 -3.8336 -0.2609 21 1 0.7363 -5.4622 -1.8819 22 1 -1.7787 -5.3206 -1.7568 23 1 -1.9380 -5.4252 1.0054 24 1 -2.3383 -3.8270 0.3067 25 1 -0.3592 -1.8342 1.3873 26 1 -0.7769 -2.3421 -0.2772 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075537610.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:30 Heat of formation + Delta-G solvation = 19.099606 kcal Electronic energy + Delta-G solvation = -10124.703111 eV Core-core repulsion = 8361.079902 eV Total energy + Delta-G solvation = -1763.623209 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.090 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.95607 -34.30854 -31.82129 -28.86557 -27.40591 -24.58062 -23.58517 -18.72554 -18.43165 -17.49708 -16.05521 -15.37953 -14.64959 -13.74568 -13.01053 -12.01557 -11.89140 -11.47968 -11.27634 -11.15933 -10.75361 -10.61105 -10.24687 -9.89138 -9.79466 -9.50660 -9.08818 -9.07696 -7.97164 -7.31612 -6.62500 -4.19731 2.96915 3.12338 3.17219 3.18850 3.96865 4.02312 5.34731 5.55194 5.66051 5.97849 6.15144 6.29363 6.45814 6.62587 6.68789 6.86086 7.10107 7.18303 7.24803 7.34290 7.45940 7.58586 7.71004 7.83948 8.10729 8.45695 8.65308 9.22320 9.30625 10.33231 Molecular weight = 176.09amu Principal moments of inertia in cm(-1) A = 0.077490 B = 0.013232 C = 0.012293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.251563 B = 2115.552714 C = 2277.191079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.455 4.455 8 H 0.072 0.928 9 C 0.084 3.916 10 C -0.428 4.428 11 C -0.003 4.003 12 H 0.052 0.948 13 C -0.124 4.124 14 C -0.205 4.205 15 C -0.083 4.083 16 C -0.111 4.111 17 H 0.076 0.924 18 C -0.048 4.048 19 H 0.277 0.723 20 H 0.084 0.916 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -2.726 0.545 3.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.082 3.918 10 C -0.449 4.449 11 C -0.021 4.021 12 H 0.070 0.930 13 C -0.142 4.142 14 C -0.223 4.223 15 C -0.120 4.120 16 C -0.130 4.130 17 H 0.094 0.906 18 C -0.085 4.085 19 H 0.087 0.913 20 H 0.102 0.898 21 H 0.125 0.875 22 H 0.125 0.875 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.388 -2.547 0.543 3.533 hybrid contribution 0.373 0.826 -0.224 0.934 sum -2.015 -1.721 0.319 2.668 Atomic orbital electron populations 1.69766 1.07497 1.28737 1.37827 1.26036 0.94801 1.01349 0.92155 0.86245 0.80884 0.81085 0.78339 1.18566 1.20106 1.19951 1.19196 0.95234 0.90299 1.43827 0.90933 1.18936 0.92009 0.92422 0.88421 1.22167 0.97548 0.92496 1.32715 1.20065 0.94749 0.95991 0.91277 0.93042 1.23391 0.95393 0.96295 0.99100 1.22929 0.96349 1.05208 0.97862 1.21196 0.98153 0.98666 0.94034 1.22989 0.93847 0.98366 0.97781 0.90597 1.20961 0.96423 0.91140 0.99947 0.91264 0.89756 0.87532 0.87504 0.92705 0.92131 0.92388 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.42 10.66 55.57 0.59 -20.82 15 2 C 0.07 1.90 5.46 -17.26 -0.09 1.80 15 3 Si 0.91 19.49 29.57 -169.99 -5.03 14.46 15 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 7 C -0.46 -12.77 9.25 -38.12 -0.35 -13.12 15 8 H 0.07 2.01 7.87 -52.48 -0.41 1.60 15 9 C 0.08 2.33 5.82 -105.00 -0.61 1.72 15 10 C -0.43 -11.23 10.01 -35.38 -0.35 -11.58 15 11 C 0.00 -0.06 3.85 -91.12 -0.35 -0.41 15 12 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 13 C -0.12 -2.60 9.85 -35.70 -0.35 -2.95 15 14 C -0.21 -3.99 10.59 -35.70 -0.38 -4.37 15 15 C -0.08 -1.60 6.05 -27.03 -0.16 -1.77 15 16 C -0.11 -2.45 4.49 -87.74 -0.39 -2.85 15 17 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 18 C -0.05 -1.21 4.07 -26.99 -0.11 -1.32 15 19 H 0.28 6.66 8.29 -40.82 -0.34 6.32 15 20 H 0.08 2.22 8.06 -52.48 -0.42 1.79 15 21 H 0.11 2.09 8.06 -52.49 -0.42 1.67 15 22 H 0.11 1.81 8.06 -52.49 -0.42 1.39 15 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.06 1.14 7.83 -51.93 -0.41 0.74 15 25 H 0.06 1.53 7.36 -51.93 -0.38 1.14 15 26 H 0.07 1.82 7.24 -51.93 -0.38 1.44 15 LS Contribution 218.18 15.07 3.29 3.29 Total: -1.00 -27.86 218.18 -7.56 -35.42 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.25 Total: 2.51 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: -3.16 Total: -34.85 kcal Atomic # 7 Polarization: -21.42 SS G_CDS: 0.59 Total: -20.82 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -27.86 -7.56 -35.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075537610.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.518 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds