Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86798 * 120.00003 * 2 1 4 4 H 1.48503 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47487 * 299.99950 * 3 2 1 6 6 H 1.48500 * 109.47595 * 60.00067 * 3 2 1 7 7 C 1.40300 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00036 * 171.38064 * 7 2 1 9 9 C 1.40074 * 120.00379 * 351.38228 * 7 2 1 10 10 C 1.34668 * 124.78756 * 170.54870 * 9 7 2 11 11 C 1.51100 * 110.59472 * 180.38204 * 10 9 7 12 12 H 1.08992 * 112.75583 * 220.40796 * 11 10 9 13 13 C 1.50994 * 109.56764 * 94.53222 * 11 10 9 14 14 C 1.30367 * 111.45533 * 233.09613 * 13 11 10 15 15 C 1.50995 * 111.19519 * 359.83290 * 14 13 11 16 16 C 1.54356 * 105.08802 * 15.73810 * 15 14 13 17 17 H 1.08994 * 114.79597 * 212.77130 * 16 15 14 18 18 C 1.51095 * 124.77752 * 350.85844 * 9 7 2 19 19 H 0.97002 * 119.99327 * 0.02562 * 1 2 3 20 20 H 1.08004 * 124.70455 * 0.35503 * 10 9 7 21 21 H 1.08001 * 124.27528 * 53.11991 * 13 11 10 22 22 H 1.08000 * 124.40394 * 179.85682 * 14 13 11 23 23 H 1.08995 * 110.31929 * 256.83253 * 15 14 13 24 24 H 1.09000 * 110.31442 * 134.64225 * 15 14 13 25 25 H 1.08992 * 110.32165 * 315.74127 * 18 9 7 26 26 H 1.08995 * 110.32215 * 77.95693 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8822 2.3965 1.2125 7 6 2.0084 -1.2150 0.0005 8 1 3.0793 -1.2204 -0.1396 9 6 1.3200 -2.4212 0.1828 10 6 1.8583 -3.6451 0.0218 11 6 0.8290 -4.7181 0.2908 12 1 1.2362 -5.5634 0.8453 13 6 0.1875 -5.1407 -1.0091 14 6 -1.1126 -5.0690 -0.9447 15 6 -1.5663 -4.5891 0.4132 16 6 -0.3052 -3.9868 1.0684 17 1 -0.2541 -4.1003 2.1512 18 6 -0.1332 -2.5324 0.5815 19 1 -0.4849 0.8401 -0.0004 20 1 2.8835 -3.8336 -0.2609 21 1 0.7363 -5.4622 -1.8819 22 1 -1.7787 -5.3206 -1.7568 23 1 -1.9380 -5.4252 1.0054 24 1 -2.3383 -3.8270 0.3067 25 1 -0.3592 -1.8342 1.3873 26 1 -0.7769 -2.3421 -0.2772 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075537610.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = 4.691312 kcal Electronic energy + Delta-G solvation = -10125.327902 eV Core-core repulsion = 8361.079902 eV Total energy + Delta-G solvation = -1764.248000 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72994 -36.24534 -33.73366 -30.62802 -29.31215 -26.43562 -25.48780 -20.62630 -20.18281 -19.22356 -18.08591 -17.17256 -16.44113 -15.55108 -14.72401 -13.88292 -13.76995 -13.31749 -13.01038 -12.91611 -12.44390 -12.31324 -11.95054 -11.73562 -11.70533 -11.31225 -11.09517 -11.03716 -9.59606 -9.37914 -8.60007 -6.30371 1.23848 1.36789 1.51678 1.58832 2.00533 2.22093 3.28980 3.85035 4.02305 4.28340 4.55849 4.62418 4.81702 4.95421 5.05688 5.07180 5.17719 5.30625 5.39458 5.47832 5.55489 5.72649 5.78046 6.05181 6.25282 6.38198 6.57601 7.14438 7.22633 8.36632 Molecular weight = 176.09amu Principal moments of inertia in cm(-1) A = 0.077490 B = 0.013232 C = 0.012293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.251563 B = 2115.552714 C = 2277.191079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.048 3.952 10 C -0.438 4.438 11 C -0.006 4.006 12 H 0.063 0.937 13 C -0.153 4.153 14 C -0.187 4.187 15 C -0.081 4.081 16 C -0.111 4.111 17 H 0.089 0.911 18 C -0.033 4.033 19 H 0.288 0.712 20 H 0.070 0.930 21 H 0.114 0.886 22 H 0.137 0.863 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -2.640 0.579 4.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.046 3.954 10 C -0.459 4.459 11 C -0.024 4.024 12 H 0.081 0.919 13 C -0.171 4.171 14 C -0.205 4.205 15 C -0.118 4.118 16 C -0.130 4.130 17 H 0.107 0.893 18 C -0.070 4.070 19 H 0.098 0.902 20 H 0.088 0.912 21 H 0.132 0.868 22 H 0.155 0.845 23 H 0.106 0.894 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.419 -2.484 0.578 4.265 hybrid contribution 0.685 0.769 -0.242 1.058 sum -2.734 -1.715 0.336 3.245 Atomic orbital electron populations 1.69804 1.08676 1.30386 1.36990 1.26869 0.95756 1.04517 0.91004 0.85120 0.79016 0.76151 0.79140 1.18856 1.18815 1.18494 1.19435 0.95056 0.92042 1.46380 0.92155 1.19389 0.93582 0.92953 0.89444 1.22459 0.97813 0.93788 1.31886 1.20098 0.94063 0.95340 0.92871 0.91936 1.23358 0.96234 0.98875 0.98681 1.23278 0.96109 1.02557 0.98564 1.21218 0.96676 0.99760 0.94111 1.23026 0.95405 0.95850 0.98673 0.89307 1.20758 0.94580 0.93209 0.98470 0.90175 0.91164 0.86775 0.84483 0.89385 0.91614 0.94173 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.04 10.66 21.89 0.23 -43.81 15 2 C 0.03 1.72 5.46 85.36 0.47 2.19 15 3 Si 0.98 39.85 29.57 68.60 2.03 41.88 15 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 15 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 6 H -0.26 -9.92 7.11 99.48 0.71 -9.22 15 7 C -0.50 -28.88 9.25 23.22 0.21 -28.67 15 8 H 0.06 3.49 7.87 -2.91 -0.02 3.47 15 9 C 0.05 2.75 5.82 -20.11 -0.12 2.63 15 10 C -0.44 -23.54 10.01 24.99 0.25 -23.29 15 11 C -0.01 -0.25 3.85 -11.12 -0.04 -0.30 15 12 H 0.06 2.62 8.14 -2.39 -0.02 2.61 15 13 C -0.15 -6.21 9.85 26.39 0.26 -5.95 15 14 C -0.19 -6.71 10.59 26.39 0.28 -6.43 15 15 C -0.08 -2.86 6.05 30.40 0.18 -2.67 15 16 C -0.11 -4.75 4.49 -8.93 -0.04 -4.79 15 17 H 0.09 3.53 8.14 -2.39 -0.02 3.51 15 18 C -0.03 -1.69 4.07 30.43 0.12 -1.57 15 19 H 0.29 13.66 8.29 -92.71 -0.77 12.90 15 20 H 0.07 3.85 8.06 -2.91 -0.02 3.82 15 21 H 0.11 4.36 8.06 -2.91 -0.02 4.33 15 22 H 0.14 4.09 8.06 -2.91 -0.02 4.06 15 23 H 0.09 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.07 2.29 7.83 -2.39 -0.02 2.27 15 25 H 0.04 2.14 7.36 -2.39 -0.02 2.13 15 26 H 0.05 2.67 7.24 -2.39 -0.02 2.65 15 Total: -1.00 -60.09 218.18 4.99 -55.10 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.15 Total: 15.68 kcal Atomic # 6 Polarization: -70.43 SS G_CDS: 1.58 Total: -68.85 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.23 Total: -43.81 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -60.09 4.99 -55.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075537610.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.795 kcal (2) G-P(sol) polarization free energy of solvation -60.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds