Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86808 * 119.99643 * 2 1 4 4 H 1.48501 * 109.46743 * 270.00120 * 3 2 1 5 5 H 1.48501 * 109.47139 * 29.99979 * 3 2 1 6 6 H 1.48499 * 109.46852 * 150.00038 * 3 2 1 7 7 C 1.40069 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.40056 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.39623 * 127.05855 * 0.02791 * 9 7 2 11 11 N 1.33022 * 107.46375 * 179.70748 * 10 9 7 12 12 C 1.31023 * 109.97773 * 0.26478 * 11 10 9 13 13 C 1.50698 * 125.17275 * 179.97438 * 12 11 10 14 14 C 1.53006 * 117.49211 * 163.77222 * 13 12 11 15 15 C 1.53002 * 117.49557 * 95.11712 * 13 12 11 16 16 N 1.35073 * 109.64466 * 0.02562 * 12 11 10 17 17 H 0.96995 * 126.48175 * 179.97438 * 16 12 11 18 18 H 0.96999 * 120.00222 * 359.97438 * 1 2 3 19 19 H 1.08002 * 126.27184 * 359.97438 * 10 9 7 20 20 H 1.08991 * 115.55592 * 309.44044 * 13 12 11 21 21 H 1.08999 * 117.50399 * 0.02562 * 14 13 12 22 22 H 1.09004 * 117.49220 * 145.02228 * 14 13 12 23 23 H 1.09003 * 117.49470 * 214.97475 * 15 13 12 24 24 H 1.09002 * 117.50097 * 359.97230 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4398 2.6528 0.7000 6 1 3.5400 1.4403 0.7000 7 6 2.0089 -1.2130 -0.0005 8 1 3.0889 -1.2129 -0.0010 9 6 1.3087 -2.4260 -0.0005 10 6 -0.0769 -2.5976 -0.0006 11 7 -0.3171 -3.9060 -0.0070 12 6 0.8132 -4.5686 -0.0054 13 6 0.9391 -6.0703 -0.0106 14 6 2.2982 -6.6638 -0.3872 15 6 1.1238 -6.7589 -1.3644 16 7 1.8483 -3.7008 0.0029 17 1 2.7913 -3.9280 0.0062 18 1 -0.4850 0.8400 0.0004 19 1 -0.8181 -1.8121 -0.0002 20 1 0.3531 -6.5939 0.7445 21 1 3.1013 -5.9682 -0.6306 22 1 2.6059 -7.5782 0.1202 23 1 0.6595 -7.7358 -1.4996 24 1 1.1538 -6.1258 -2.2512 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082408876.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 43.348472 kcal Electronic energy + Delta-G solvation = -10021.261933 eV Core-core repulsion = 8127.838412 eV Total energy + Delta-G solvation = -1893.423521 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.88590 -37.70685 -35.49279 -32.88030 -30.33307 -27.09808 -23.56836 -23.27652 -21.73833 -20.85167 -19.30469 -17.66285 -16.66933 -16.14262 -15.16999 -14.82579 -14.53982 -14.01524 -13.40543 -12.93900 -12.73241 -12.52243 -12.37697 -11.93363 -11.55717 -11.30854 -11.11809 -10.37295 -10.26310 -8.91703 -8.53821 -6.28974 1.29149 1.41150 1.56838 1.82771 2.20779 2.61081 2.85880 3.07865 3.35619 3.80546 4.00095 4.22349 4.57538 4.76093 4.94593 5.09850 5.13303 5.20734 5.27261 5.65810 5.70194 5.95916 6.51205 6.82763 6.94509 7.37592 7.96418 8.44044 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.093824 B = 0.010910 C = 0.010056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.358099 B = 2565.827481 C = 2783.654471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.024 3.976 3 Si 1.008 2.992 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.477 4.477 8 H 0.082 0.918 9 C 0.152 3.848 10 C -0.179 4.179 11 N -0.515 5.515 12 C 0.122 3.878 13 C -0.076 4.076 14 C -0.155 4.155 15 C -0.162 4.162 16 N -0.598 5.598 17 H 0.410 0.590 18 H 0.286 0.714 19 H 0.164 0.836 20 H 0.121 0.879 21 H 0.086 0.914 22 H 0.132 0.868 23 H 0.125 0.875 24 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.396 -5.397 -0.728 8.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.190 4.190 3 Si 0.828 3.172 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.100 0.900 9 C 0.039 3.961 10 C -0.326 4.326 11 N -0.236 5.236 12 C -0.135 4.135 13 C -0.096 4.096 14 C -0.193 4.193 15 C -0.200 4.200 16 N -0.211 5.211 17 H 0.248 0.752 18 H 0.097 0.903 19 H 0.180 0.820 20 H 0.139 0.861 21 H 0.105 0.895 22 H 0.150 0.850 23 H 0.143 0.857 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.298 -5.621 -0.720 7.757 hybrid contribution 1.103 1.173 0.008 1.610 sum 6.401 -4.448 -0.712 7.827 Atomic orbital electron populations 1.69735 1.09104 1.30003 1.37402 1.26802 0.95734 1.04544 0.91872 0.84813 0.78397 0.74666 0.79311 1.18787 1.19312 1.17978 1.18772 0.94538 0.89075 1.48830 0.89951 1.19324 0.93426 0.84272 0.99081 1.23236 0.94851 0.91272 1.23234 1.69334 1.28220 1.06771 1.19244 1.22039 0.83006 0.92771 1.15684 1.20002 1.03138 0.85182 1.01258 1.23067 0.90305 1.03181 1.02722 1.23039 1.02472 1.02153 0.92378 1.42822 1.08498 1.05949 1.63825 0.75236 0.90295 0.81957 0.86068 0.89532 0.85015 0.85666 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.81 10.35 21.86 0.23 -45.59 14 2 C 0.02 1.23 5.50 85.28 0.47 1.70 14 3 Si 1.01 38.65 29.56 68.60 2.03 40.68 14 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 14 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 14 6 H -0.26 -9.35 7.11 99.48 0.71 -8.64 14 7 C -0.48 -26.08 9.45 23.16 0.22 -25.87 14 8 H 0.08 4.13 7.85 -2.91 -0.02 4.11 14 9 C 0.15 8.73 6.96 38.88 0.27 9.00 14 10 C -0.18 -11.03 10.88 84.85 0.92 -10.10 14 11 N -0.52 -29.65 11.18 -184.79 -2.07 -31.71 14 12 C 0.12 5.93 7.62 137.97 1.05 6.98 14 13 C -0.08 -2.69 6.33 -11.54 -0.07 -2.76 14 14 C -0.16 -4.01 10.11 30.62 0.31 -3.70 14 15 C -0.16 -4.67 10.24 30.62 0.31 -4.36 14 16 N -0.60 -29.00 6.07 -178.77 -1.08 -30.08 14 17 H 0.41 16.53 8.08 -92.71 -0.75 15.78 14 18 H 0.29 14.15 8.30 -92.71 -0.77 13.38 14 19 H 0.16 10.49 5.78 -2.91 -0.02 10.47 14 20 H 0.12 4.01 8.14 -2.39 -0.02 3.99 14 21 H 0.09 2.27 7.28 -2.39 -0.02 2.25 14 22 H 0.13 2.48 8.14 -2.39 -0.02 2.46 14 23 H 0.13 2.79 8.14 -2.39 -0.02 2.77 14 24 H 0.07 2.39 8.14 -2.39 -0.02 2.38 14 Total: -1.00 -68.07 215.41 3.05 -65.02 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.47 Total: 30.79 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.48 Total: -29.11 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -2.92 Total: -107.38 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -68.07 3.05 -65.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408876.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.364 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds