Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31338 * 1 3 3 Si 1.86793 * 119.99563 * 2 1 4 4 H 1.48502 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47258 * 299.99779 * 3 2 1 6 6 H 1.48502 * 109.47556 * 60.00139 * 3 2 1 7 7 C 1.38938 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.37565 * 119.99660 * 359.97438 * 7 2 1 10 10 C 1.36264 * 126.51637 * 359.97438 * 9 7 2 11 11 N 1.30486 * 108.51209 * 180.02562 * 10 9 7 12 12 C 1.34244 * 109.40342 * 359.97438 * 11 10 9 13 13 C 1.50697 * 125.85883 * 179.97438 * 12 11 10 14 14 C 1.53005 * 117.49864 * 163.64804 * 13 12 11 15 15 C 1.53001 * 60.00172 * 252.51019 * 14 13 12 16 16 C 1.34638 * 108.27723 * 0.02562 * 12 11 10 17 17 H 0.96993 * 119.99864 * 0.02562 * 1 2 3 18 18 H 1.07998 * 125.74706 * 0.02562 * 10 9 7 19 19 H 1.08996 * 115.55417 * 309.35699 * 13 12 11 20 20 H 1.09004 * 117.49424 * 359.97438 * 14 13 12 21 21 H 1.08999 * 117.50226 * 145.02109 * 14 13 12 22 22 H 1.08994 * 117.49875 * 252.50695 * 15 14 13 23 23 H 1.09003 * 117.51817 * 107.47658 * 15 14 13 24 24 H 1.07995 * 126.57963 * 179.97438 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.7073 1.3465 -0.0006 5 1 1.8885 2.3964 -1.2125 6 1 1.8885 2.3965 1.2125 7 6 2.0081 -1.2032 -0.0005 8 1 3.0880 -1.2032 -0.0001 9 7 1.3203 -2.3945 -0.0005 10 6 -0.0336 -2.5492 0.0004 11 7 -0.3048 -3.8255 0.0006 12 6 0.8410 -4.5249 -0.0008 13 6 0.9582 -6.0274 -0.0005 14 6 2.3109 -6.6306 -0.3843 15 6 1.1298 -6.7229 -1.3525 16 6 1.8675 -3.6537 -0.0013 17 1 -0.4849 0.8400 -0.0004 18 1 -0.7599 -1.7499 0.0010 19 1 0.3741 -6.5444 0.7608 20 1 3.1160 -5.9406 -0.6374 21 1 2.6171 -7.5445 0.1246 22 1 0.6590 -7.6975 -1.4805 23 1 1.1575 -6.0937 -2.2422 24 1 2.9194 -3.8985 -0.0020 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082408882.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = 74.425424 kcal Electronic energy + Delta-G solvation = -10057.481708 eV Core-core repulsion = 8165.405784 eV Total energy + Delta-G solvation = -1892.075924 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30640 -36.37692 -33.80868 -30.88810 -27.56149 -25.42428 -22.16999 -21.81327 -20.14425 -18.48837 -17.77765 -15.36676 -15.04442 -14.36656 -13.55299 -13.31395 -12.55602 -12.44593 -11.85135 -11.36362 -11.08194 -10.96328 -10.86289 -10.50179 -10.15264 -9.78239 -9.46275 -8.37723 -8.31812 -6.78659 -6.77567 -4.51467 2.89828 2.99431 3.05701 3.65094 3.77310 4.33206 4.73184 4.98037 5.11051 5.42710 5.55235 5.72790 6.07934 6.23444 6.39353 6.54832 6.64303 6.71332 6.99392 7.05180 7.40433 7.52257 8.20467 8.54143 8.75915 9.49100 9.87150 10.21739 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.094796 B = 0.011062 C = 0.010193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.300926 B = 2530.651329 C = 2746.365863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.039 3.961 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.108 0.892 9 N -0.276 5.276 10 C 0.143 3.857 11 N -0.537 5.537 12 C -0.016 4.016 13 C -0.042 4.042 14 C -0.181 4.181 15 C -0.179 4.179 16 C -0.121 4.121 17 H 0.281 0.719 18 H 0.226 0.774 19 H 0.099 0.901 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 -3.090 -0.595 4.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.169 4.169 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.126 0.874 9 N 0.060 4.940 10 C -0.136 4.136 11 N -0.258 5.258 12 C -0.150 4.150 13 C -0.061 4.061 14 C -0.219 4.219 15 C -0.216 4.216 16 C -0.262 4.262 17 H 0.093 0.907 18 H 0.241 0.759 19 H 0.117 0.883 20 H 0.110 0.890 21 H 0.106 0.894 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.956 -3.029 -0.591 4.273 hybrid contribution 1.249 1.139 -0.005 1.690 sum 4.205 -1.890 -0.596 4.648 Atomic orbital electron populations 1.69518 1.06480 1.28719 1.43487 1.25557 0.95761 1.00833 0.94763 0.85478 0.79313 0.79177 0.78477 1.18836 1.19860 1.19842 1.20073 0.92866 0.81639 1.51565 0.87420 1.41845 1.06952 1.04408 1.40822 1.26309 0.84733 0.94017 1.08585 1.69970 1.28204 1.03463 1.24122 1.19145 0.89940 0.92239 1.13646 1.19817 0.98449 0.90416 0.97421 1.22879 0.92406 1.02222 1.04382 1.22891 1.02564 1.01343 0.94852 1.21777 0.98084 0.84821 1.21522 0.90737 0.75857 0.88295 0.89018 0.89366 0.89556 0.89233 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.06 10.17 55.49 0.56 -21.50 14 2 C 0.04 0.97 5.48 -17.50 -0.10 0.88 14 3 Si 0.95 18.91 29.55 -169.99 -5.02 13.89 14 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 14 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 14 7 C -0.33 -8.83 10.23 -14.72 -0.15 -8.98 14 8 H 0.11 2.67 7.83 -52.49 -0.41 2.26 14 9 N -0.28 -7.65 2.93 -63.13 -0.18 -7.83 14 10 C 0.14 4.06 11.49 -89.26 -1.03 3.03 14 11 N -0.54 -14.86 11.24 -10.57 -0.12 -14.98 14 12 C -0.02 -0.39 6.73 -82.81 -0.56 -0.94 14 13 C -0.04 -0.83 6.33 -91.77 -0.58 -1.41 14 14 C -0.18 -2.94 10.00 -26.73 -0.27 -3.20 14 15 C -0.18 -3.05 10.23 -26.73 -0.27 -3.32 14 16 C -0.12 -3.08 10.79 -16.38 -0.18 -3.25 14 17 H 0.28 6.65 8.31 -40.82 -0.34 6.31 14 18 H 0.23 6.39 5.49 -52.49 -0.29 6.10 14 19 H 0.10 1.87 8.14 -51.93 -0.42 1.45 14 20 H 0.09 1.50 7.12 -51.93 -0.37 1.13 14 21 H 0.09 1.19 8.14 -51.93 -0.42 0.77 14 22 H 0.09 1.25 8.14 -51.93 -0.42 0.83 14 23 H 0.09 1.63 8.14 -51.93 -0.42 1.21 14 24 H 0.14 3.17 7.34 -52.49 -0.39 2.78 14 LS Contribution 215.15 15.07 3.24 3.24 Total: -1.00 -29.23 215.15 -6.93 -36.16 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -2.28 Total: 8.23 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -3.13 Total: -17.20 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.26 Total: -44.31 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -29.23 -6.93 -36.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408882.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.582 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds