Wall clock time and date at job start Mon Mar 30 2020 02:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48504 * 109.46688 * 239.99947 * 3 2 1 5 5 H 1.48496 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47199 * 119.99787 * 3 2 1 7 7 C 1.40298 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99850 * 180.02562 * 7 2 1 9 9 C 1.39802 * 120.00715 * 0.02562 * 7 2 1 10 10 N 1.32912 * 125.48502 * 359.97438 * 9 7 2 11 11 C 1.32909 * 109.91610 * 180.02562 * 10 9 7 12 12 N 1.37475 * 145.63863 * 179.97438 * 11 10 9 13 13 H 0.96995 * 126.07973 * 0.02562 * 12 11 10 14 14 N 1.40043 * 107.83873 * 179.83377 * 12 11 10 15 15 C 1.30838 * 109.40120 * 0.36840 * 14 12 11 16 16 C 1.39680 * 108.92893 * 359.62552 * 15 14 12 17 17 N 1.37793 * 125.49563 * 179.97438 * 9 7 2 18 18 H 0.96992 * 126.61660 * 359.97438 * 17 9 7 19 19 H 0.96994 * 120.00064 * 0.02562 * 1 2 3 20 20 H 1.08002 * 125.53868 * 179.89635 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6963 -1.2126 5 1 1.2755 2.7464 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0078 -1.2150 0.0005 8 1 3.0879 -1.2151 0.0010 9 6 1.3089 -2.4258 0.0005 10 7 -0.0141 -2.5530 0.0005 11 6 -0.3452 -3.8401 0.0011 12 7 -1.3794 -4.7459 0.0018 13 1 -2.3256 -4.5325 0.0018 14 7 -0.8238 -6.0314 -0.0018 15 6 0.4814 -5.9408 0.0033 16 6 0.8419 -4.5913 0.0019 17 7 1.8805 -3.6796 0.0005 18 1 2.8289 -3.8830 0.0002 19 1 -0.4850 0.8400 -0.0004 20 1 1.1685 -6.7740 0.0036 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082408892.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:29 Heat of formation + Delta-G solvation = 98.293739 kcal Electronic energy + Delta-G solvation = -9935.547958 eV Core-core repulsion = 7940.966699 eV Total energy + Delta-G solvation = -1994.581259 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.055 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.53128 -39.03359 -35.30841 -33.09557 -30.95897 -30.26981 -27.07557 -22.62763 -22.20780 -21.60342 -19.04372 -18.56595 -16.99103 -16.24792 -16.03868 -15.23712 -14.80621 -13.75221 -13.61292 -13.27501 -12.72951 -12.67884 -12.06523 -11.65230 -11.40562 -11.04238 -9.91503 -9.13024 -8.91007 -8.46858 -6.52677 0.90573 1.48392 1.56196 1.62557 1.85331 2.18124 2.25192 2.60964 2.92919 3.50905 4.06137 4.14454 4.66943 5.12760 5.37600 5.48481 5.95240 6.07114 6.26582 6.61718 6.88098 7.05064 7.48707 8.00896 8.46143 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.109881 B = 0.012438 C = 0.011218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 254.760192 B = 2250.572739 C = 2495.490687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.033 3.967 3 Si 1.004 2.996 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.471 4.471 8 H 0.111 0.889 9 C 0.409 3.591 10 N -0.568 5.568 11 C 0.213 3.787 12 N -0.490 5.490 13 H 0.438 0.562 14 N -0.318 5.318 15 C 0.096 3.904 16 C -0.203 4.203 17 N -0.615 5.615 18 H 0.417 0.583 19 H 0.284 0.716 20 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 -1.000 0.008 4.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.190 4.190 3 Si 0.824 3.176 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.511 4.511 8 H 0.129 0.871 9 C 0.167 3.833 10 N -0.302 5.302 11 C -0.032 4.032 12 N -0.212 5.212 13 H 0.283 0.717 14 N -0.140 5.140 15 C -0.093 4.093 16 C -0.319 4.319 17 N -0.233 5.233 18 H 0.256 0.744 19 H 0.094 0.906 20 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.684 -1.165 0.004 2.926 hybrid contribution 1.145 0.509 0.000 1.253 sum 3.829 -0.655 0.004 3.885 Atomic orbital electron populations 1.70108 1.09359 1.30013 1.30053 1.26960 0.95610 1.04566 0.91818 0.84931 0.78182 0.74202 0.80332 1.17857 1.19830 1.17846 1.18878 0.95290 0.87612 1.49301 0.87122 1.20618 0.85905 0.85192 0.91606 1.70604 1.11725 1.11897 1.35968 1.20366 0.88928 0.91976 1.01909 1.44954 1.06070 1.00647 1.69524 0.71733 1.76854 1.08919 0.98724 1.29471 1.22845 0.92566 0.93068 1.00796 1.19554 0.89890 0.93568 1.28888 1.42327 1.06909 1.04224 1.69848 0.74431 0.90552 0.77074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -41.39 11.86 21.89 0.26 -41.13 14 2 C 0.03 1.62 5.50 85.37 0.47 2.09 14 3 Si 1.00 35.66 29.56 68.60 2.03 37.69 14 4 H -0.25 -8.57 7.11 99.48 0.71 -7.87 14 5 H -0.27 -9.47 7.11 99.48 0.71 -8.76 14 6 H -0.25 -8.57 7.11 99.48 0.71 -7.86 14 7 C -0.47 -23.85 9.45 23.15 0.22 -23.63 14 8 H 0.11 4.88 7.85 -2.91 -0.02 4.86 14 9 C 0.41 22.23 7.57 133.48 1.01 23.25 14 10 N -0.57 -33.27 9.30 -190.37 -1.77 -35.04 14 11 C 0.21 11.37 9.21 133.76 1.23 12.60 14 12 N -0.49 -22.32 7.47 -55.24 -0.41 -22.73 14 13 H 0.44 17.35 8.96 -213.36 -1.91 15.44 14 14 N -0.32 -13.41 12.62 -57.15 -0.72 -14.13 14 15 C 0.10 3.83 11.97 85.19 1.02 4.85 14 16 C -0.20 -9.72 8.14 39.03 0.32 -9.40 14 17 N -0.62 -28.66 6.34 -184.99 -1.17 -29.84 14 18 H 0.42 15.80 8.96 -92.71 -0.83 14.97 14 19 H 0.28 13.76 8.29 -92.71 -0.77 12.99 14 20 H 0.21 6.10 8.06 -2.91 -0.02 6.08 14 Total: -1.00 -66.61 192.45 1.04 -65.57 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -1.44 Total: 29.85 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 4.27 Total: 9.76 kcal Atomic # 7 Polarization: -139.05 SS G_CDS: -3.82 Total: -142.87 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -66.61 1.04 -65.57 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408892.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.863 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds