Wall clock time and date at job start Mon Mar 30 2020 02:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47141 * 240.00244 * 3 2 1 5 5 H 1.48499 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47143 * 119.99973 * 3 2 1 7 7 C 1.40199 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.39555 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.39315 * 125.83437 * 179.97438 * 9 7 2 11 11 C 1.40149 * 107.91232 * 180.02562 * 10 9 7 12 12 N 1.33134 * 144.41455 * 180.37366 * 11 10 9 13 13 C 1.32930 * 109.05596 * 180.02562 * 12 11 10 14 14 C 1.36089 * 108.44985 * 359.62127 * 13 12 11 15 15 N 1.35925 * 107.23446 * 0.22917 * 14 13 12 16 16 O 1.35158 * 125.83152 * 0.02787 * 9 7 2 17 17 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 18 18 H 1.08002 * 126.03849 * 0.02562 * 10 9 7 19 19 H 1.08002 * 125.77894 * 179.89355 * 13 12 11 20 20 H 1.08000 * 126.38323 * 180.23057 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2763 2.7464 -0.0006 6 1 3.0950 1.6963 1.2124 7 6 2.0082 -1.2142 0.0005 8 1 3.0883 -1.2142 0.0001 9 6 1.3105 -2.4228 0.0016 10 6 1.8808 -3.6938 0.0018 11 6 0.8405 -4.6330 0.0024 12 7 0.5561 -5.9336 0.0079 13 6 -0.7641 -6.0891 0.0028 14 6 -1.3429 -4.8574 0.0024 15 7 -0.3392 -3.9408 0.0021 16 8 -0.0341 -2.5601 0.0017 17 1 -0.4850 0.8400 -0.0004 18 1 2.9377 -3.9160 0.0014 19 1 -1.2887 -7.0332 0.0038 20 1 -2.4023 -4.6474 0.0023 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082408898.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:34 Heat of formation + Delta-G solvation = 102.736890 kcal Electronic energy + Delta-G solvation = -9991.937009 eV Core-core repulsion = 7965.255668 eV Total energy + Delta-G solvation = -2026.681341 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40552 -37.86290 -34.11921 -31.02720 -29.93583 -28.49049 -25.37140 -21.15740 -20.59852 -19.77230 -17.44570 -15.83690 -15.60010 -15.23676 -14.28855 -13.78363 -12.80539 -12.44183 -12.26177 -11.61513 -11.56995 -11.51730 -11.14373 -10.57540 -9.97026 -9.15379 -8.92827 -8.28987 -7.41184 -7.06201 -4.91823 2.31149 2.50216 2.79185 2.83899 3.00245 3.36847 3.52553 4.25884 4.84327 5.18730 5.66395 6.11055 6.27054 6.52696 6.64612 6.99997 7.22306 7.42781 7.69642 7.76281 8.07960 8.15896 8.67967 9.15588 9.57760 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.115837 B = 0.012392 C = 0.011238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 241.661285 B = 2259.054125 C = 2490.873607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.062 3.938 3 Si 0.940 3.060 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.408 4.408 8 H 0.124 0.876 9 C 0.234 3.766 10 C -0.426 4.426 11 C 0.279 3.721 12 N -0.536 5.536 13 C -0.003 4.003 14 C -0.088 4.088 15 N -0.381 5.381 16 O -0.013 6.013 17 H 0.298 0.702 18 H 0.139 0.861 19 H 0.169 0.831 20 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 2.637 -0.010 2.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.163 4.163 3 Si 0.762 3.238 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.438 4.438 8 H 0.141 0.859 9 C 0.180 3.820 10 C -0.454 4.454 11 C 0.033 3.967 12 N -0.262 5.262 13 C -0.155 4.155 14 C -0.217 4.217 15 N -0.109 5.109 16 O -0.002 6.002 17 H 0.109 0.891 18 H 0.157 0.843 19 H 0.187 0.813 20 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.402 2.483 -0.003 2.516 hybrid contribution -0.484 1.440 -0.003 1.519 sum -0.886 3.924 -0.006 4.023 Atomic orbital electron populations 1.69620 1.08024 1.31683 1.29581 1.26429 0.95263 1.03156 0.91429 0.85791 0.79706 0.77493 0.80784 1.17965 1.19679 1.17960 1.19031 0.95410 0.86244 1.43088 0.85850 1.19878 0.78496 0.94689 0.88962 1.19611 0.96875 0.86837 1.42114 1.21526 0.87107 0.87807 1.00265 1.70436 1.14076 1.12084 1.29637 1.22118 0.90519 0.95124 1.07732 1.21699 0.92249 0.85576 1.22167 1.48073 1.09416 0.96334 1.57123 1.89312 1.24676 0.99112 1.87077 0.89069 0.84317 0.81348 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.60 11.97 55.56 0.67 -17.94 14 2 C 0.06 1.41 5.50 -17.29 -0.10 1.31 14 3 Si 0.94 16.36 29.56 -169.99 -5.03 11.33 14 4 H -0.26 -4.34 7.11 56.52 0.40 -3.94 14 5 H -0.27 -4.62 7.11 56.52 0.40 -4.22 14 6 H -0.26 -4.34 7.11 56.52 0.40 -3.94 14 7 C -0.41 -9.96 9.30 -38.35 -0.36 -10.32 14 8 H 0.12 2.69 7.85 -52.48 -0.41 2.28 14 9 C 0.23 6.34 6.84 -38.69 -0.26 6.07 14 10 C -0.43 -11.43 10.83 -38.46 -0.42 -11.84 14 11 C 0.28 7.68 8.54 -156.13 -1.33 6.35 14 12 N -0.54 -13.91 11.32 -12.83 -0.15 -14.05 14 13 C 0.00 -0.06 11.86 -17.85 -0.21 -0.27 14 14 C -0.09 -2.01 12.03 -16.51 -0.20 -2.21 14 15 N -0.38 -10.27 4.94 -12.16 -0.06 -10.33 14 16 O -0.01 -0.38 10.38 6.68 0.07 -0.31 14 17 H 0.30 6.41 8.29 -40.82 -0.34 6.07 14 18 H 0.14 3.42 8.06 -52.49 -0.42 2.99 14 19 H 0.17 2.87 8.06 -52.49 -0.42 2.45 14 20 H 0.16 2.98 8.06 -52.49 -0.42 2.56 14 LS Contribution 194.71 15.07 2.93 2.93 Total: -1.00 -29.77 194.71 -5.25 -35.02 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -0.81 Total: 4.25 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.88 Total: -10.91 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.46 Total: -42.32 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: 0.07 Total: -0.31 kcal Atomic # 14 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.33 kcal Total LS contribution 2.93 Total: 2.93 kcal Total: -29.77 -5.25 -35.02 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408898.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.757 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds