Wall clock time and date at job start Mon Mar 30 2020 02:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48506 * 109.46851 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47266 * 119.99717 * 3 2 1 6 6 H 1.48493 * 109.47308 * 239.99904 * 3 2 1 7 7 C 1.39936 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00475 * 154.60759 * 7 2 1 9 9 C 1.41401 * 120.00319 * 334.60323 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.58663 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 N 1.46896 * 109.47392 * 260.31268 * 15 14 13 17 17 H 0.96995 * 120.00183 * 174.17306 * 1 2 3 18 18 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 19 19 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 20 20 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 21 21 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 22 22 H 1.09004 * 109.46459 * 20.31125 * 15 14 13 23 23 H 1.08997 * 109.46775 * 140.30765 * 15 14 13 24 24 H 1.00903 * 111.00190 * 56.04174 * 16 15 14 25 25 H 1.00892 * 111.00162 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2772 2.7465 0.0006 5 1 3.0960 1.6965 1.2125 6 1 3.0961 1.6964 -1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0098 -1.2570 -0.4016 9 6 1.4035 -2.3776 0.5241 10 6 0.3892 -2.2747 1.4943 11 6 -0.1916 -3.4157 1.9983 12 6 0.2192 -4.6633 1.5542 13 6 1.2180 -4.7766 0.5998 14 6 1.8087 -3.6485 0.0772 15 6 2.8894 -3.7746 -0.9656 16 7 4.2045 -3.6223 -0.3289 17 1 -0.4850 -0.8356 -0.0853 18 1 0.0685 -1.3039 1.8425 19 1 -0.9705 -3.3392 2.7425 20 1 -0.2419 -5.5536 1.9556 21 1 1.5305 -5.7534 0.2614 22 1 2.8258 -4.7548 -1.4380 23 1 2.7588 -2.9986 -1.7198 24 1 4.3239 -4.2897 0.4184 25 1 4.9464 -3.7025 -1.0078 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082631702.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:29 Heat of formation + Delta-G solvation = 2.661861 kcal Electronic energy + Delta-G solvation = -10117.035078 eV Core-core repulsion = 8287.273164 eV Total energy + Delta-G solvation = -1829.761914 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.88748 -33.93758 -33.64304 -29.40386 -29.10661 -25.16311 -23.63069 -20.87490 -19.71541 -17.64491 -15.49866 -14.68688 -14.46210 -14.01543 -13.66052 -13.27617 -12.21144 -11.95263 -11.82678 -11.29579 -11.10965 -10.77472 -10.36126 -10.31225 -9.62423 -9.26730 -8.87570 -7.94454 -7.55937 -7.46954 -7.05653 -4.32573 2.82245 2.88109 3.22138 3.35217 3.43625 4.09468 4.63686 5.32580 5.73153 5.98784 6.10215 6.19492 6.39259 6.51188 6.83045 7.02826 7.25932 7.50033 7.73455 7.77816 7.89801 7.98543 8.05701 8.14841 8.29841 8.42056 8.91361 9.01257 10.13633 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.041498 B = 0.017905 C = 0.013327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.576831 B = 1563.448667 C = 2100.488275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.035 3.965 3 Si 1.065 2.935 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.090 0.910 9 C 0.115 3.885 10 C -0.222 4.222 11 C -0.085 4.085 12 C -0.262 4.262 13 C -0.076 4.076 14 C -0.206 4.206 15 C 0.131 3.869 16 N -0.839 5.839 17 H 0.298 0.702 18 H 0.104 0.896 19 H 0.087 0.913 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.005 0.995 23 H 0.071 0.929 24 H 0.332 0.668 25 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -2.473 -0.831 4.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.186 4.186 3 Si 0.889 3.111 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.534 4.534 8 H 0.108 0.892 9 C 0.111 3.889 10 C -0.242 4.242 11 C -0.104 4.104 12 C -0.281 4.281 13 C -0.095 4.095 14 C -0.207 4.207 15 C 0.002 3.998 16 N -0.367 5.367 17 H 0.112 0.888 18 H 0.122 0.878 19 H 0.105 0.895 20 H 0.104 0.896 21 H 0.102 0.898 22 H 0.023 0.977 23 H 0.089 0.911 24 H 0.144 0.856 25 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.134 -0.078 -0.608 3.193 hybrid contribution 0.237 -2.806 -0.278 2.830 sum 3.371 -2.884 -0.886 4.524 Atomic orbital electron populations 1.70452 1.08330 1.34221 1.29419 1.27051 0.95674 1.04467 0.91399 0.83645 0.75591 0.73855 0.78018 1.20148 1.20054 1.20195 1.20721 1.03531 0.93410 1.35729 0.89223 1.17446 0.89925 0.92110 0.89379 1.21192 1.03883 0.96916 1.02185 1.20601 0.98193 0.93261 0.98350 1.20237 1.05337 0.95754 1.06809 1.20435 0.96559 0.95853 0.96699 1.19525 1.03800 0.93283 1.04130 1.20282 0.87311 0.97059 0.95156 1.58704 1.03451 1.59581 1.14975 0.88837 0.87798 0.89489 0.89620 0.89831 0.97730 0.91062 0.85623 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.68 12.32 55.55 0.68 -21.00 15 2 C 0.04 0.92 4.94 -17.34 -0.09 0.83 15 3 Si 1.06 22.28 30.00 -169.99 -5.10 17.18 15 4 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.51 -13.61 8.12 -37.74 -0.31 -13.91 15 8 H 0.09 2.40 6.91 -52.48 -0.36 2.03 15 9 C 0.11 3.09 5.30 -106.82 -0.57 2.52 15 10 C -0.22 -5.89 7.95 -38.87 -0.31 -6.20 15 11 C -0.09 -2.06 10.02 -39.66 -0.40 -2.46 15 12 C -0.26 -6.05 10.05 -39.29 -0.39 -6.45 15 13 C -0.08 -1.76 9.65 -39.66 -0.38 -2.14 15 14 C -0.21 -5.02 5.45 -103.91 -0.57 -5.59 15 15 C 0.13 2.76 6.10 -4.97 -0.03 2.73 15 16 N -0.84 -15.77 9.35 -11.41 -0.11 -15.88 15 17 H 0.30 8.30 6.68 -40.82 -0.27 8.03 15 18 H 0.10 2.83 6.49 -52.49 -0.34 2.49 15 19 H 0.09 1.87 8.06 -52.49 -0.42 1.45 15 20 H 0.09 1.76 8.06 -52.49 -0.42 1.33 15 21 H 0.08 1.69 8.03 -52.49 -0.42 1.27 15 22 H 0.00 0.09 8.01 -51.93 -0.42 -0.33 15 23 H 0.07 1.59 7.34 -51.93 -0.38 1.21 15 24 H 0.33 5.90 8.99 -39.29 -0.35 5.54 15 25 H 0.32 5.01 9.08 -39.30 -0.36 4.66 15 LS Contribution 218.20 15.07 3.29 3.29 Total: -1.00 -28.20 218.20 -6.82 -35.02 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -2.54 Total: 12.05 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -3.04 Total: -30.67 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.58 Total: -36.88 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.10 Total: 17.18 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -28.20 -6.82 -35.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082631702.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.685 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds