Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38300 * 119.96161 * 269.72073 * 10 9 7 12 12 C 1.38274 * 120.15102 * 179.73064 * 11 10 9 13 13 C 1.38131 * 120.06979 * 0.54684 * 12 11 10 14 14 C 1.38887 * 119.92477 * 359.72657 * 13 12 11 15 15 N 1.39671 * 120.07698 * 179.97438 * 14 13 12 16 16 C 1.38084 * 119.95922 * 89.99840 * 10 9 7 17 17 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 18 18 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 19 19 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 20 20 H 1.08000 * 119.92914 * 359.97438 * 11 10 9 21 21 H 1.07991 * 119.96262 * 180.27881 * 12 11 10 22 22 H 1.07996 * 120.03617 * 179.75017 * 13 12 11 23 23 H 0.97000 * 120.00812 * 180.02562 * 15 14 13 24 24 H 0.97008 * 119.99933 * 0.02562 * 15 14 13 25 25 H 1.07996 * 120.04296 * 359.97438 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6694 -4.1701 -1.2149 12 6 3.5722 -5.2174 -1.2263 13 6 4.0300 -5.7496 -0.0367 14 6 3.5868 -5.2279 1.1717 15 7 4.0471 -5.7639 2.3765 16 6 2.6839 -4.1718 1.1796 17 1 -0.4850 -0.8400 0.0004 18 1 0.6281 -2.5591 0.8866 19 1 0.6207 -2.5548 -0.8933 20 1 2.3094 -3.7591 -2.1464 21 1 3.9165 -5.6224 -2.1663 22 1 4.7320 -6.5702 -0.0463 23 1 3.7366 -5.3990 3.2199 24 1 4.6775 -6.5013 2.3699 25 1 2.3375 -3.7637 2.1175 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083255040.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = 4.147675 kcal Electronic energy + Delta-G solvation = -9753.733871 eV Core-core repulsion = 7924.036386 eV Total energy + Delta-G solvation = -1829.697484 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.72105 -34.56243 -33.18057 -30.90600 -28.16505 -26.49293 -23.15464 -21.62780 -20.37484 -16.88556 -16.38366 -15.91325 -15.21617 -13.73327 -13.67921 -13.34701 -12.98907 -12.48606 -11.98902 -11.31985 -11.07851 -10.73191 -10.41568 -10.14091 -10.02829 -9.76133 -8.86272 -8.33656 -7.84463 -7.00578 -6.34610 -4.05082 2.15231 2.31250 3.45290 3.49293 3.65473 4.24014 4.51071 4.66736 5.40045 5.50287 5.61069 5.98519 6.15175 6.27168 6.40204 6.76362 6.90081 7.11464 7.19020 7.25182 7.51333 7.79871 7.98804 8.10457 8.18411 8.48312 8.87929 9.65657 11.04393 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.059603 B = 0.010728 C = 0.010345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.659048 B = 2609.366471 C = 2705.874554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.589 4.589 8 H 0.051 0.949 9 C 0.033 3.967 10 C 0.014 3.986 11 C -0.178 4.178 12 C -0.078 4.078 13 C -0.226 4.226 14 C 0.207 3.793 15 N -0.886 5.886 16 C -0.198 4.198 17 H 0.269 0.731 18 H 0.018 0.982 19 H 0.020 0.980 20 H 0.113 0.887 21 H 0.111 0.889 22 H 0.107 0.893 23 H 0.394 0.606 24 H 0.391 0.609 25 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.692 -9.217 1.749 11.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.188 4.188 3 Si 0.901 3.099 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.627 4.627 8 H 0.069 0.931 9 C -0.003 4.003 10 C 0.013 3.987 11 C -0.198 4.198 12 C -0.097 4.097 13 C -0.248 4.248 14 C 0.104 3.896 15 N -0.426 5.426 16 C -0.220 4.220 17 H 0.079 0.921 18 H 0.036 0.964 19 H 0.038 0.962 20 H 0.131 0.869 21 H 0.129 0.871 22 H 0.125 0.875 23 H 0.221 0.779 24 H 0.218 0.782 25 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.477 -7.545 1.689 10.086 hybrid contribution 0.418 -1.843 0.367 1.925 sum 6.895 -9.388 2.056 11.828 Atomic orbital electron populations 1.70753 1.06856 1.30619 1.46759 1.25885 0.96526 1.02638 0.93776 0.83482 0.74692 0.74913 0.76772 1.21448 1.21412 1.20942 1.21926 0.94414 0.90805 1.55595 0.93055 1.18495 0.93334 0.91533 0.96966 1.20184 0.94036 0.92888 0.91616 1.20842 1.01848 0.99164 0.97956 1.20759 0.96336 0.95940 0.96663 1.20296 1.07738 1.05307 0.91493 1.17769 0.93029 0.92642 0.86135 1.42374 1.53589 1.41365 1.05311 1.20482 1.03312 0.99554 0.98700 0.92058 0.96386 0.96182 0.86890 0.87126 0.87479 0.77871 0.78228 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.65 55.43 0.76 -27.44 15 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 15 3 Si 1.07 25.78 29.90 -169.99 -5.08 20.69 15 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.59 -17.22 9.09 -34.44 -0.31 -17.53 15 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.89 4.41 -29.03 -0.13 0.76 15 10 C 0.01 0.31 5.07 -104.66 -0.53 -0.22 15 11 C -0.18 -3.73 9.69 -39.55 -0.38 -4.12 15 12 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 15 13 C -0.23 -3.82 9.90 -39.38 -0.39 -4.21 15 14 C 0.21 3.66 6.75 -83.79 -0.57 3.09 15 15 N -0.89 -11.78 9.09 32.41 0.29 -11.49 15 16 C -0.20 -4.13 9.55 -39.38 -0.38 -4.51 15 17 H 0.27 8.25 7.22 -40.82 -0.29 7.95 15 18 H 0.02 0.49 7.96 -51.93 -0.41 0.08 15 19 H 0.02 0.55 7.94 -51.93 -0.41 0.14 15 20 H 0.11 2.31 8.06 -52.49 -0.42 1.89 15 21 H 0.11 1.63 8.06 -52.49 -0.42 1.20 15 22 H 0.11 1.50 8.06 -52.49 -0.42 1.08 15 23 H 0.39 4.67 8.84 -40.82 -0.36 4.31 15 24 H 0.39 4.13 8.84 -40.82 -0.36 3.77 15 25 H 0.11 2.32 8.06 -52.49 -0.42 1.90 15 LS Contribution 224.71 15.07 3.39 3.39 Total: -1.00 -31.82 224.71 -6.56 -38.38 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -2.74 Total: 4.64 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -3.18 Total: -28.17 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 1.05 Total: -38.92 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.82 -6.56 -38.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083255040.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.528 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds