Wall clock time and date at job start Mon Mar 30 2020 02:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38300 * 119.96161 * 269.72073 * 10 9 7 12 12 C 1.38274 * 120.15102 * 179.73064 * 11 10 9 13 13 C 1.38131 * 120.06979 * 0.54684 * 12 11 10 14 14 C 1.38887 * 119.92477 * 359.72657 * 13 12 11 15 15 N 1.39671 * 120.07698 * 179.97438 * 14 13 12 16 16 C 1.38084 * 119.95922 * 89.99840 * 10 9 7 17 17 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 18 18 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 19 19 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 20 20 H 1.08000 * 119.92914 * 359.97438 * 11 10 9 21 21 H 1.07991 * 119.96262 * 180.27881 * 12 11 10 22 22 H 1.07996 * 120.03617 * 179.75017 * 13 12 11 23 23 H 0.97000 * 120.00812 * 180.02562 * 15 14 13 24 24 H 0.97008 * 119.99933 * 0.02562 * 15 14 13 25 25 H 1.07996 * 120.04296 * 359.97438 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6694 -4.1701 -1.2149 12 6 3.5722 -5.2174 -1.2263 13 6 4.0300 -5.7496 -0.0367 14 6 3.5868 -5.2279 1.1717 15 7 4.0471 -5.7639 2.3765 16 6 2.6839 -4.1718 1.1796 17 1 -0.4850 -0.8400 0.0004 18 1 0.6281 -2.5591 0.8866 19 1 0.6207 -2.5548 -0.8933 20 1 2.3094 -3.7591 -2.1464 21 1 3.9165 -5.6224 -2.1663 22 1 4.7320 -6.5702 -0.0463 23 1 3.7366 -5.3990 3.2199 24 1 4.6775 -6.5013 2.3699 25 1 2.3375 -3.7637 2.1175 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083255040.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:30 Heat of formation + Delta-G solvation = -17.034757 kcal Electronic energy + Delta-G solvation = -9754.652410 eV Core-core repulsion = 7924.036386 eV Total energy + Delta-G solvation = -1830.616024 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.21993 -36.28391 -34.97271 -32.66203 -29.65972 -28.36938 -25.26777 -23.11418 -21.99985 -19.01216 -17.65991 -17.43586 -16.69340 -15.66543 -15.36108 -15.21786 -14.46971 -14.09732 -13.72900 -13.33184 -12.93198 -12.51062 -12.14611 -11.94563 -11.61096 -11.46798 -10.87120 -10.59322 -9.52971 -8.71185 -8.34538 -6.43133 0.63574 0.79663 1.50976 1.60589 1.79471 2.54486 3.05339 3.09060 3.12605 4.09410 4.17246 4.40296 4.64706 4.74995 4.83353 5.01311 5.20327 5.24281 5.46391 5.69412 5.89651 6.03956 6.11707 6.13585 6.51923 6.66417 7.08394 7.37272 8.67670 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.059603 B = 0.010728 C = 0.010345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.659048 B = 2609.366471 C = 2705.874554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.036 4.036 3 Si 1.123 2.877 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.278 1.278 7 C -0.603 4.603 8 H 0.044 0.956 9 C 0.039 3.961 10 C -0.020 4.020 11 C -0.204 4.204 12 C -0.067 4.067 13 C -0.217 4.217 14 C 0.216 3.784 15 N -0.867 5.867 16 C -0.221 4.221 17 H 0.256 0.744 18 H -0.003 1.003 19 H -0.001 1.001 20 H 0.104 0.896 21 H 0.148 0.852 22 H 0.150 0.850 23 H 0.402 0.598 24 H 0.409 0.591 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.085 -10.393 1.958 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.943 3.057 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.641 4.641 8 H 0.063 0.937 9 C 0.002 3.998 10 C -0.021 4.021 11 C -0.224 4.224 12 C -0.085 4.085 13 C -0.240 4.240 14 C 0.111 3.889 15 N -0.408 5.408 16 C -0.244 4.244 17 H 0.065 0.935 18 H 0.015 0.985 19 H 0.017 0.983 20 H 0.122 0.878 21 H 0.166 0.834 22 H 0.167 0.833 23 H 0.231 0.769 24 H 0.240 0.760 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.887 -8.774 1.934 12.637 hybrid contribution -0.288 -1.624 0.341 1.684 sum 8.599 -10.398 2.275 13.683 Atomic orbital electron populations 1.70884 1.07833 1.29860 1.48649 1.27512 0.96590 1.06697 0.92526 0.82876 0.74076 0.70786 0.77970 1.19538 1.19639 1.20337 1.22233 0.94248 0.92314 1.55299 0.93745 1.18294 0.93734 0.92950 0.94785 1.19959 0.95159 0.93211 0.93783 1.20870 1.03764 1.01070 0.96677 1.21125 0.94376 0.94101 0.98910 1.20781 1.07243 1.05498 0.90452 1.17801 0.91613 0.91305 0.88163 1.42313 1.52993 1.41195 1.04307 1.20432 1.05124 1.01384 0.97446 0.93505 0.98510 0.98317 0.87824 0.83394 0.83250 0.76914 0.76050 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.49 13.65 21.45 0.29 -59.19 15 2 C -0.04 -2.16 5.46 84.65 0.46 -1.70 15 3 Si 1.12 51.83 29.90 68.60 2.05 53.88 15 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 15 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 7 C -0.60 -36.44 9.09 25.60 0.23 -36.21 15 8 H 0.04 2.68 7.74 -2.91 -0.02 2.66 15 9 C 0.04 2.22 4.41 29.10 0.13 2.35 15 10 C -0.02 -0.97 5.07 -19.89 -0.10 -1.07 15 11 C -0.20 -8.56 9.69 22.29 0.22 -8.34 15 12 C -0.07 -2.18 10.04 22.25 0.22 -1.95 15 13 C -0.22 -6.45 9.90 22.40 0.22 -6.22 15 14 C 0.22 7.09 6.75 38.22 0.26 7.34 15 15 N -0.87 -19.98 9.09 -51.37 -0.47 -20.45 15 16 C -0.22 -9.25 9.55 22.40 0.21 -9.03 15 17 H 0.26 16.49 7.22 -92.71 -0.67 15.82 15 18 H 0.00 -0.20 7.96 -2.39 -0.02 -0.21 15 19 H 0.00 -0.08 7.94 -2.39 -0.02 -0.10 15 20 H 0.10 4.39 8.06 -2.91 -0.02 4.36 15 21 H 0.15 3.69 8.06 -2.92 -0.02 3.67 15 22 H 0.15 3.22 8.06 -2.91 -0.02 3.20 15 23 H 0.40 8.39 8.84 -92.71 -0.82 7.57 15 24 H 0.41 6.73 8.84 -92.70 -0.82 5.92 15 25 H 0.10 4.38 8.06 -2.91 -0.02 4.36 15 Total: -1.00 -70.50 224.71 3.39 -67.11 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -0.34 Total: 13.49 kcal Atomic # 6 Polarization: -56.70 SS G_CDS: 1.86 Total: -54.85 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -0.17 Total: -79.64 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.05 Total: 53.88 kcal Total: -70.50 3.39 -67.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083255040.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.077 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds