Wall clock time and date at job start Mon Mar 30 2020 01:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48492 * 109.47496 * 270.00401 * 3 2 1 5 5 H 1.48501 * 109.47220 * 30.00506 * 3 2 1 6 6 H 1.48500 * 109.47008 * 150.00131 * 3 2 1 7 7 C 1.37880 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99210 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46875 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47501 * 305.00786 * 10 9 7 12 12 Cl 1.80306 * 109.46947 * 65.00628 * 10 9 7 13 13 C 1.53003 * 109.47107 * 185.00182 * 10 9 7 14 14 C 1.53001 * 117.51964 * 231.28841 * 13 10 9 15 15 C 1.52999 * 60.00190 * 107.47982 * 14 13 10 16 16 H 0.97000 * 119.99658 * 359.97438 * 1 2 3 17 17 H 1.09007 * 109.46491 * 60.00471 * 9 7 2 18 18 H 1.08994 * 109.47290 * 300.00008 * 9 7 2 19 19 H 1.09002 * 115.54973 * 85.58625 * 13 10 9 20 20 H 1.09001 * 117.49733 * 214.97413 * 14 13 10 21 21 H 1.08995 * 117.49577 * 359.97438 * 14 13 10 22 22 H 1.09004 * 117.50150 * 252.51496 * 15 14 13 23 23 H 1.09004 * 117.49681 * 107.48417 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5871 -3.1755 0.8410 12 17 3.5440 -3.4429 -1.5414 13 6 5.5464 -2.6384 0.1242 14 6 6.3385 -3.4570 -0.8972 15 6 6.3459 -1.9288 -0.9704 16 1 -0.4850 0.8401 0.0004 17 1 3.8751 -0.6805 0.8890 18 1 3.8745 -0.6801 -0.8911 19 1 5.9346 -2.5916 1.1416 20 1 7.2479 -3.9488 -0.5517 21 1 5.7733 -3.9948 -1.6584 22 1 5.7856 -1.4609 -1.7799 23 1 7.2602 -1.4151 -0.6730 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083632262.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:49 Heat of formation + Delta-G solvation = -17.535997 kcal Electronic energy + Delta-G solvation = -8412.198682 eV Core-core repulsion = 6671.865463 eV Total energy + Delta-G solvation = -1740.333219 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.051 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.89306 -36.16901 -35.15606 -32.56987 -27.59856 -23.73202 -22.82562 -20.79012 -18.96170 -17.12161 -16.36202 -15.79602 -14.85309 -14.70169 -13.90273 -13.33103 -13.06466 -12.65860 -12.22411 -12.06331 -11.75760 -11.66034 -11.31114 -11.06660 -10.88313 -10.74805 -10.60158 -8.24924 -6.28302 1.37859 1.38614 1.49702 1.57776 2.38141 2.94830 3.11163 3.76255 4.00077 4.10417 4.37177 4.57711 4.70865 4.86012 5.03581 5.14930 5.22098 5.37515 5.40092 5.63334 6.28741 6.78534 7.34489 8.91887 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.059153 B = 0.015823 C = 0.013433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.237491 B = 1769.202522 C = 2083.960063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.521 4.521 8 H 0.038 0.962 9 C -0.009 4.009 10 C 0.053 3.947 11 H 0.091 0.909 12 Cl -0.205 7.205 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.175 4.175 16 H 0.264 0.736 17 H 0.043 0.957 18 H 0.026 0.974 19 H 0.135 0.865 20 H 0.116 0.884 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.557 -2.946 -0.057 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.559 4.559 8 H 0.056 0.944 9 C -0.046 4.046 10 C 0.009 3.991 11 H 0.109 0.891 12 Cl -0.179 7.179 13 C -0.192 4.192 14 C -0.206 4.206 15 C -0.211 4.211 16 H 0.073 0.927 17 H 0.061 0.939 18 H 0.044 0.956 19 H 0.152 0.848 20 H 0.134 0.866 21 H 0.113 0.887 22 H 0.098 0.902 23 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.378 -2.904 -0.167 13.691 hybrid contribution -0.504 0.653 -0.139 0.836 sum 12.874 -2.252 -0.305 13.073 Atomic orbital electron populations 1.70070 1.08317 1.27936 1.52978 1.25932 0.95521 1.03261 0.94394 0.85745 0.79804 0.78632 0.79008 1.19692 1.21214 1.16354 1.21374 0.91431 0.93360 1.49738 0.94388 1.19785 0.94605 0.92391 0.97852 1.23594 0.94402 0.95728 0.85359 0.89115 1.98639 1.93492 1.83012 1.42760 1.22658 0.90544 1.08329 0.97703 1.23276 1.01985 0.93990 1.01397 1.22986 1.02087 0.95536 1.00539 0.92672 0.93889 0.95603 0.84750 0.86616 0.88669 0.90234 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.06 13.96 21.45 0.30 -59.76 14 2 C 0.01 0.31 5.47 84.66 0.46 0.78 14 3 Si 0.94 43.83 27.47 68.60 1.88 45.71 14 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 14 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 14 6 H -0.24 -10.08 6.54 99.48 0.65 -9.43 14 7 C -0.52 -29.55 9.17 25.60 0.23 -29.32 14 8 H 0.04 2.40 7.93 -2.91 -0.02 2.37 14 9 C -0.01 -0.41 3.35 29.85 0.10 -0.31 14 10 C 0.05 2.01 3.14 30.59 0.10 2.10 14 11 H 0.09 3.48 8.14 -2.39 -0.02 3.46 14 12 Cl -0.21 -8.17 25.43 -2.72 -0.07 -8.23 14 13 C -0.17 -5.04 5.85 -10.79 -0.06 -5.11 14 14 C -0.17 -4.28 9.73 30.59 0.30 -3.98 14 15 C -0.17 -4.67 9.61 30.60 0.29 -4.37 14 16 H 0.26 15.61 8.31 -92.71 -0.77 14.84 14 17 H 0.04 1.87 7.20 -2.38 -0.02 1.85 14 18 H 0.03 1.17 6.90 -2.39 -0.02 1.15 14 19 H 0.13 3.28 8.14 -2.39 -0.02 3.26 14 20 H 0.12 2.26 8.14 -2.39 -0.02 2.24 14 21 H 0.10 2.67 6.10 -2.39 -0.01 2.66 14 22 H 0.08 2.45 7.67 -2.39 -0.02 2.43 14 23 H 0.12 2.47 8.14 -2.38 -0.02 2.45 14 Total: -1.00 -63.90 210.60 4.66 -59.23 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.13 Total: 3.25 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 1.42 Total: -40.21 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.30 Total: -59.76 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Atomic # 17 Polarization: -8.17 SS G_CDS: -0.07 Total: -8.23 kcal Total: -63.90 4.66 -59.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083632262.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.698 kcal (2) G-P(sol) polarization free energy of solvation -63.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds