Wall clock time and date at job start Mon Mar 30 2020 01:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.46773 * 55.00766 * 10 9 7 12 12 Cl 1.80294 * 109.47474 * 295.00587 * 10 9 7 13 13 C 1.52995 * 109.47161 * 175.00101 * 10 9 7 14 14 C 1.52999 * 117.49740 * 133.74948 * 13 10 9 15 15 C 1.53001 * 117.49756 * 65.08982 * 13 10 9 16 16 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 18 18 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 19 19 H 1.09005 * 115.55487 * 279.42056 * 13 10 9 20 20 H 1.09001 * 117.50107 * 0.02562 * 14 13 10 21 21 H 1.09001 * 117.50067 * 145.01796 * 14 13 10 22 22 H 1.08996 * 117.50002 * 214.97145 * 15 13 10 23 23 H 1.09000 * 117.49994 * 359.97438 * 15 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9296 -3.5514 0.8518 12 17 3.1820 -3.6588 -1.5302 13 6 1.4847 -4.9828 0.1421 14 6 1.8802 -6.1227 -0.7988 15 6 0.5572 -5.3815 -1.0076 16 1 -0.4850 0.8400 0.0004 17 1 0.6245 -2.5529 0.8956 18 1 0.6244 -2.5609 -0.8844 19 1 1.1760 -5.2489 1.1531 20 1 2.6827 -5.9317 -1.5113 21 1 1.8315 -7.1386 -0.4069 22 1 -0.3613 -5.9103 -0.7531 23 1 0.4887 -4.7026 -1.8576 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083632264.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:51 Heat of formation + Delta-G solvation = -4.517250 kcal Electronic energy + Delta-G solvation = -8368.331843 eV Core-core repulsion = 6628.563159 eV Total energy + Delta-G solvation = -1739.768684 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.051 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.40998 -34.55738 -33.14443 -30.21674 -25.43892 -22.30206 -21.51925 -19.25897 -16.48259 -15.60275 -14.49917 -14.19706 -13.14967 -12.58064 -11.89720 -11.40311 -11.25314 -11.00955 -10.61402 -10.35175 -10.14209 -10.02973 -9.68862 -9.47689 -9.04895 -8.86976 -8.37193 -6.00463 -4.01840 3.24364 3.32745 3.40401 3.45585 4.25579 4.47911 5.15208 5.36771 5.37913 5.41457 5.82507 6.03670 6.22443 6.28288 6.53334 6.59756 6.61154 7.52247 7.65890 7.96510 8.34405 9.02703 9.61768 11.11038 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.073636 B = 0.013548 C = 0.012144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.158293 B = 2066.179442 C = 2305.102265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.046 3.954 11 H 0.088 0.912 12 Cl -0.205 7.205 13 C -0.160 4.160 14 C -0.188 4.188 15 C -0.170 4.170 16 H 0.260 0.740 17 H 0.033 0.967 18 H 0.031 0.969 19 H 0.110 0.890 20 H 0.105 0.895 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 -8.151 -0.296 8.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.079 0.921 9 C -0.015 4.015 10 C 0.003 3.997 11 H 0.106 0.894 12 Cl -0.179 7.179 13 C -0.178 4.178 14 C -0.225 4.225 15 C -0.207 4.207 16 H 0.069 0.931 17 H 0.051 0.949 18 H 0.049 0.951 19 H 0.128 0.872 20 H 0.123 0.877 21 H 0.102 0.898 22 H 0.106 0.894 23 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.597 -8.030 -0.409 8.449 hybrid contribution 0.389 0.946 -0.002 1.023 sum 2.986 -7.084 -0.411 7.698 Atomic orbital electron populations 1.69966 1.06034 1.26540 1.51070 1.24966 0.94800 0.99221 0.95304 0.86531 0.80242 0.83762 0.77484 1.19649 1.21044 1.21125 1.21223 0.93254 0.90489 1.50304 0.92135 1.19408 0.93253 0.90238 0.98583 1.23920 0.95120 0.95710 0.84939 0.89351 1.98626 1.77803 1.98595 1.42873 1.22652 1.03721 0.95368 0.96071 1.23223 0.99887 0.95673 1.03752 1.22887 0.93455 1.03376 1.01006 0.93055 0.94912 0.95074 0.87250 0.87673 0.89751 0.89389 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.97 14 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 14 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 14 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 14 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 14 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 14 7 C -0.51 -14.31 8.61 -34.44 -0.30 -14.61 14 8 H 0.06 1.67 7.68 -52.49 -0.40 1.27 14 9 C 0.02 0.55 4.35 -27.88 -0.12 0.43 14 10 C 0.05 0.95 3.13 -26.73 -0.08 0.87 14 11 H 0.09 1.77 8.14 -51.92 -0.42 1.34 14 12 Cl -0.20 -4.17 25.34 -51.86 -1.31 -5.49 14 13 C -0.16 -2.74 5.79 -90.62 -0.52 -3.26 14 14 C -0.19 -2.85 9.75 -26.69 -0.26 -3.11 14 15 C -0.17 -2.78 9.60 -26.69 -0.26 -3.03 14 16 H 0.26 7.32 8.31 -40.82 -0.34 6.98 14 17 H 0.03 0.86 8.14 -51.93 -0.42 0.44 14 18 H 0.03 0.84 7.83 -51.93 -0.41 0.43 14 19 H 0.11 1.71 8.14 -51.93 -0.42 1.28 14 20 H 0.11 1.66 6.21 -51.93 -0.32 1.34 14 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 14 22 H 0.09 1.26 8.14 -51.93 -0.42 0.84 14 23 H 0.10 1.79 7.91 -51.93 -0.41 1.38 14 LS Contribution 214.83 15.07 3.24 3.24 Total: -1.00 -28.97 214.83 -6.79 -35.76 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -2.79 Total: -3.19 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.64 Total: -21.15 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -4.17 SS G_CDS: -1.31 Total: -5.49 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -28.97 -6.79 -35.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083632264.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.240 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds