Wall clock time and date at job start Mon Mar 30 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47310 * 2 1 4 4 C 1.50699 * 109.47135 * 119.99749 * 2 1 3 5 5 H 1.08010 * 119.99553 * 119.99796 * 4 2 1 6 6 C 1.37868 * 120.00492 * 299.99981 * 4 2 1 7 7 N 1.31516 * 119.99749 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00161 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47133 * 60.00422 * 8 6 4 10 10 H 1.48506 * 109.46867 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47181 * 299.99987 * 8 6 4 12 12 C 1.50697 * 109.47026 * 239.99954 * 2 1 3 13 13 C 1.38678 * 120.42012 * 120.00088 * 12 2 1 14 14 C 1.38625 * 118.42261 * 180.02562 * 13 12 2 15 15 C 1.38222 * 119.16079 * 359.97438 * 14 13 12 16 16 N 1.31852 * 120.76489 * 0.02562 * 15 14 13 17 17 C 1.31887 * 121.72468 * 359.97438 * 16 15 14 18 18 H 1.08994 * 109.46817 * 59.99838 * 1 2 3 19 19 H 1.08994 * 109.47000 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46504 * 299.99845 * 1 2 3 21 21 H 0.97008 * 119.99716 * 180.02562 * 7 6 4 22 22 H 1.08003 * 120.78653 * 0.29511 * 13 12 2 23 23 H 1.07998 * 120.41681 * 180.02562 * 14 13 12 24 24 H 1.07997 * 119.61999 * 179.97438 * 15 14 13 25 25 H 1.08001 * 119.61657 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1209 4.0081 10 1 1.8271 -0.4198 5.2204 11 1 1.8260 -2.5202 4.0077 12 6 2.0323 -0.7104 -1.2304 13 6 2.8301 -0.0449 -2.1490 14 6 3.2687 -0.7381 -3.2665 15 6 2.8993 -2.0604 -3.4267 16 7 2.1392 -2.6614 -2.5325 17 6 1.7038 -2.0331 -1.4577 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3632 0.5139 0.8901 21 1 0.7089 1.1613 3.4845 22 1 3.1069 0.9877 -1.9951 23 1 3.8918 -0.2514 -4.0022 24 1 3.2364 -2.6073 -4.2947 25 1 1.0826 -2.5584 -0.7474 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327989.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:19 Heat of formation + Delta-G solvation = 2.831246 kcal Electronic energy + Delta-G solvation = -9996.410960 eV Core-core repulsion = 8166.656391 eV Total energy + Delta-G solvation = -1829.754569 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93143 -36.58545 -33.72713 -32.75974 -30.11823 -27.23827 -24.78597 -24.17388 -21.68316 -18.41596 -17.87872 -16.89302 -16.73456 -15.53545 -14.84670 -14.55272 -14.39177 -13.81080 -13.57622 -13.10613 -12.87095 -12.81105 -12.24834 -12.15827 -11.51643 -11.14824 -10.56975 -10.49533 -10.17194 -9.61014 -8.12458 -6.26781 0.39604 0.52839 1.42297 1.42902 1.50905 2.41936 3.06193 3.16588 3.71651 4.12479 4.22908 4.33647 4.40244 4.74834 4.88841 4.95955 5.14952 5.22049 5.33184 5.45361 5.58754 5.89939 5.94946 6.05810 6.30823 6.80560 7.18074 7.41637 8.91917 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.061804 B = 0.012606 C = 0.011796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.935137 B = 2220.596139 C = 2373.044876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.076 3.924 3 H 0.012 0.988 4 C -0.526 4.526 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.272 1.272 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.161 4.161 15 C 0.064 3.936 16 N -0.509 5.509 17 C 0.084 3.916 18 H 0.025 0.975 19 H 0.031 0.969 20 H 0.062 0.938 21 H 0.263 0.737 22 H 0.137 0.863 23 H 0.169 0.831 24 H 0.185 0.815 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 -1.908 -8.102 8.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.057 3.943 3 H 0.030 0.970 4 C -0.564 4.564 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.197 1.197 12 C -0.108 4.108 13 C -0.127 4.127 14 C -0.180 4.180 15 C -0.093 4.093 16 N -0.218 5.218 17 C -0.072 4.072 18 H 0.044 0.956 19 H 0.050 0.950 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.155 0.845 23 H 0.186 0.814 24 H 0.202 0.798 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.913 -2.672 -8.090 9.004 hybrid contribution 0.343 0.668 1.271 1.476 sum 3.256 -2.004 -6.819 7.818 Atomic orbital electron populations 1.21645 0.97199 0.99338 0.99906 1.17689 0.93251 0.94145 0.89201 0.96987 1.21315 1.31490 1.12419 0.91205 0.93348 1.25676 0.95129 0.95646 1.01679 1.69990 1.37241 1.23870 1.24241 0.85683 0.78703 0.78873 0.78860 1.19927 1.20623 1.19672 1.21430 0.96588 0.95857 0.96931 1.21818 0.96053 1.00947 0.93876 1.22416 1.01179 0.95926 0.98462 1.23236 0.94727 0.93213 0.98155 1.67638 1.11416 1.39582 1.03210 1.22451 0.98330 0.92096 0.94336 0.95586 0.94968 0.91882 0.92744 0.84514 0.81398 0.79840 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.79 71.98 0.63 -5.33 15 2 C 0.08 3.82 2.49 -12.29 -0.03 3.79 15 3 H 0.01 0.65 7.93 -2.38 -0.02 0.63 15 4 C -0.53 -28.82 8.25 25.60 0.21 -28.61 15 5 H 0.05 2.66 7.61 -2.91 -0.02 2.64 15 6 C 0.02 0.98 5.30 84.65 0.45 1.43 15 7 N -0.91 -51.88 11.32 21.44 0.24 -51.64 15 8 Si 0.95 43.35 29.54 68.60 2.03 45.38 15 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 12 C -0.11 -4.59 4.74 -19.78 -0.09 -4.69 15 13 C -0.10 -3.62 9.81 22.47 0.22 -3.40 15 14 C -0.16 -4.57 10.11 22.36 0.23 -4.35 15 15 C 0.06 1.92 11.18 84.69 0.95 2.86 15 16 N -0.51 -19.33 10.36 -195.85 -2.03 -21.36 15 17 C 0.08 3.53 9.90 84.67 0.84 4.36 15 18 H 0.03 1.11 8.14 -2.39 -0.02 1.09 15 19 H 0.03 1.49 7.41 -2.39 -0.02 1.47 15 20 H 0.06 3.35 6.07 -2.38 -0.01 3.34 15 21 H 0.26 14.22 8.31 -92.70 -0.77 13.45 15 22 H 0.14 4.50 8.00 -2.91 -0.02 4.47 15 23 H 0.17 3.25 8.06 -2.91 -0.02 3.23 15 24 H 0.18 3.90 8.06 -2.91 -0.02 3.88 15 25 H 0.14 6.06 7.59 -2.91 -0.02 6.04 15 Total: -1.00 -60.74 220.31 4.81 -55.94 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.17 Total: 5.60 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 3.40 Total: -33.92 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.79 Total: -73.00 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -60.74 4.81 -55.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327989.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.767 kcal (2) G-P(sol) polarization free energy of solvation -60.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds