Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09000 * 112.50843 * 50.05078 * 9 7 2 11 11 C 1.52880 * 113.16373 * 179.88082 * 9 7 2 12 12 C 1.51603 * 84.67293 * 115.22400 * 11 9 7 13 13 C 1.38947 * 145.53317 * 179.97438 * 12 11 9 14 14 C 1.37974 * 120.32159 * 180.02562 * 13 12 11 15 15 C 1.38244 * 120.17894 * 0.02562 * 14 13 12 16 16 C 1.38174 * 119.74617 * 0.02562 * 15 14 13 17 17 C 1.38237 * 120.12734 * 359.97438 * 16 15 14 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09001 * 113.99025 * 229.16080 * 11 9 7 20 20 H 1.09000 * 113.99148 * 1.27823 * 11 9 7 21 21 H 1.07998 * 119.84561 * 0.04007 * 13 12 11 22 22 H 1.08006 * 119.91314 * 180.02562 * 14 13 12 23 23 H 1.08000 * 120.12927 * 180.02562 * 15 14 13 24 24 H 1.07999 * 119.94007 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.4856 -2.5357 -0.7807 11 6 2.1674 -3.7228 -0.0068 12 6 1.5648 -4.0000 1.3564 13 6 1.5534 -4.8551 2.4515 14 6 0.7249 -4.6011 3.5251 15 6 -0.1011 -3.4926 3.5184 16 6 -0.0948 -2.6394 2.4316 17 6 0.7349 -2.8929 1.3553 18 1 -0.4850 0.8401 -0.0004 19 1 1.9137 -4.4656 -0.7632 20 1 3.2299 -3.4808 0.0188 21 1 2.1964 -5.7228 2.4625 22 1 0.7218 -5.2699 4.3731 23 1 -0.7490 -3.2943 4.3594 24 1 -0.7391 -1.7728 2.4229 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085574415.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = 52.709135 kcal Electronic energy + Delta-G solvation = -9512.886774 eV Core-core repulsion = 7778.032462 eV Total energy + Delta-G solvation = -1734.854312 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 174.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.30231 -34.76207 -32.18884 -29.75074 -26.95875 -25.15072 -22.50149 -20.49444 -19.01730 -16.61159 -15.55366 -14.66968 -14.12004 -13.64919 -13.39056 -12.19228 -12.09533 -11.90216 -11.39538 -10.98173 -10.91282 -10.65363 -10.01047 -9.79453 -9.55833 -9.02802 -8.43529 -7.89189 -7.50291 -6.08517 -4.13996 2.24921 2.40376 3.29938 3.34154 3.37060 4.38535 4.74924 5.18539 5.32750 5.65287 5.72197 5.89288 6.24882 6.44354 6.48483 6.67065 6.68494 6.83189 7.17083 7.25706 7.39612 7.54192 7.83879 7.90049 8.15585 8.28007 8.87865 9.50451 11.00257 Molecular weight = 174.07amu Principal moments of inertia in cm(-1) A = 0.060631 B = 0.014559 C = 0.013098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.697351 B = 1922.809475 C = 2137.207060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.089 3.911 10 H 0.055 0.945 11 C -0.079 4.079 12 C -0.156 4.156 13 C -0.110 4.110 14 C -0.153 4.153 15 C -0.130 4.130 16 C -0.099 4.099 17 C -0.057 4.057 18 H 0.263 0.737 19 H 0.070 0.930 20 H 0.080 0.920 21 H 0.101 0.899 22 H 0.108 0.892 23 H 0.110 0.890 24 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -5.123 3.208 6.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.071 3.929 10 H 0.073 0.927 11 C -0.116 4.116 12 C -0.156 4.156 13 C -0.128 4.128 14 C -0.171 4.171 15 C -0.148 4.148 16 C -0.117 4.117 17 C -0.057 4.057 18 H 0.073 0.927 19 H 0.088 0.912 20 H 0.098 0.902 21 H 0.119 0.881 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.942 -4.996 3.217 6.016 hybrid contribution 0.383 0.913 0.312 1.038 sum 1.325 -4.082 3.528 5.556 Atomic orbital electron populations 1.69967 1.05993 1.26934 1.48884 1.25021 0.94890 0.99261 0.94448 0.86621 0.79652 0.82802 0.78761 1.20040 1.21172 1.20155 1.20916 0.92771 0.89521 1.51646 0.92044 1.18835 0.92760 0.92335 0.89003 0.92720 1.21945 1.00205 0.98640 0.90820 1.22705 0.99971 0.96458 0.96436 1.20381 0.99825 0.99085 0.93545 1.20616 0.99326 0.98878 0.98293 1.20890 1.00047 0.95812 0.98010 1.20308 0.99614 0.99199 0.92587 1.22753 0.91159 0.93471 0.98361 0.92746 0.91203 0.90159 0.88111 0.87375 0.87155 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.24 13.28 55.43 0.74 -24.51 14 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 14 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 14 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 14 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 14 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 7 C -0.51 -14.12 8.71 -34.44 -0.30 -14.42 14 8 H 0.06 1.66 7.65 -52.49 -0.40 1.26 14 9 C 0.09 2.29 3.41 -96.59 -0.33 1.96 14 10 H 0.05 1.49 8.14 -51.93 -0.42 1.07 14 11 C -0.08 -1.70 8.01 -27.50 -0.22 -1.93 14 12 C -0.16 -3.47 7.32 -107.51 -0.79 -4.26 14 13 C -0.11 -2.16 10.05 -39.42 -0.40 -2.56 14 14 C -0.15 -2.83 10.03 -39.68 -0.40 -3.23 14 15 C -0.13 -2.54 10.06 -39.60 -0.40 -2.94 14 16 C -0.10 -2.29 10.04 -39.60 -0.40 -2.69 14 17 C -0.06 -1.41 7.05 -104.55 -0.74 -2.15 14 18 H 0.26 7.16 8.31 -40.82 -0.34 6.82 14 19 H 0.07 1.32 8.14 -51.93 -0.42 0.90 14 20 H 0.08 1.66 7.87 -51.93 -0.41 1.25 14 21 H 0.10 1.68 8.06 -52.49 -0.42 1.26 14 22 H 0.11 1.63 8.06 -52.48 -0.42 1.21 14 23 H 0.11 1.81 8.06 -52.49 -0.42 1.39 14 24 H 0.11 2.71 8.06 -52.49 -0.42 2.28 14 LS Contribution 216.61 15.07 3.26 3.26 Total: -1.00 -28.94 216.61 -7.56 -36.50 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -2.48 Total: -0.99 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -4.06 Total: -30.44 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.74 Total: -24.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.94 -7.56 -36.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085574415.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.211 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds