Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09001 * 112.83154 * 311.39292 * 9 7 2 11 11 C 1.53525 * 113.58692 * 180.27820 * 9 7 2 12 12 C 1.51617 * 87.24542 * 245.41095 * 11 9 7 13 13 C 1.38375 * 147.52425 * 179.97438 * 12 11 9 14 14 C 1.38095 * 120.32316 * 179.97438 * 13 12 11 15 15 C 1.38244 * 119.95469 * 0.02562 * 14 13 12 16 16 C 1.38088 * 119.96037 * 0.02562 * 15 14 13 17 17 C 1.38381 * 120.32614 * 359.97438 * 16 15 14 18 18 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 19 19 H 1.09001 * 113.58797 * 0.02562 * 11 9 7 20 20 H 1.09006 * 113.58594 * 130.82241 * 11 9 7 21 21 H 1.07992 * 119.83534 * 0.02562 * 13 12 11 22 22 H 1.07996 * 120.02056 * 180.02562 * 14 13 12 23 23 H 1.08009 * 120.01999 * 179.97438 * 15 14 13 24 24 H 1.08002 * 119.84087 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.4677 -2.5317 0.7625 11 6 2.1625 -3.7345 0.0108 12 6 1.6120 -4.0561 -1.3648 13 6 1.6170 -4.9097 -2.4539 14 6 0.8063 -4.6557 -3.5426 15 6 -0.0148 -3.5435 -3.5472 16 6 -0.0229 -2.6878 -2.4634 17 6 0.7874 -2.9376 -1.3698 18 1 -0.4850 0.8400 0.0004 19 1 3.2253 -3.4925 0.0101 20 1 1.8960 -4.4698 0.7701 21 1 2.2574 -5.7793 -2.4520 22 1 0.8138 -5.3254 -4.3898 23 1 -0.6490 -3.3436 -4.3983 24 1 -0.6649 -1.8193 -2.4692 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085574419.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = 34.891676 kcal Electronic energy + Delta-G solvation = -9496.568869 eV Core-core repulsion = 7760.941934 eV Total energy + Delta-G solvation = -1735.626935 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 174.074 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.89577 -36.42568 -34.23472 -31.40465 -28.82774 -26.98897 -24.27580 -22.20067 -20.76034 -18.64012 -17.18916 -16.59678 -15.85360 -15.40423 -15.12297 -13.97573 -13.72373 -13.63334 -13.18977 -12.86994 -12.67746 -12.45845 -11.78307 -11.64026 -11.37758 -10.89588 -10.53958 -9.54279 -9.19744 -8.19360 -6.31787 0.63079 0.74800 1.38865 1.39986 1.52227 2.39190 3.03240 3.15774 3.63931 4.00359 4.29990 4.34289 4.47993 4.74780 4.86046 4.97126 5.07960 5.19908 5.46503 5.47705 5.67497 5.74593 5.79917 6.21423 6.24306 6.43832 6.77377 7.36269 8.89917 Molecular weight = 174.07amu Principal moments of inertia in cm(-1) A = 0.061032 B = 0.014350 C = 0.012970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.664644 B = 1950.723039 C = 2158.281662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.068 3.932 10 H 0.026 0.974 11 C -0.062 4.062 12 C -0.165 4.165 13 C -0.104 4.104 14 C -0.137 4.137 15 C -0.126 4.126 16 C -0.131 4.131 17 C -0.110 4.110 18 H 0.263 0.737 19 H 0.083 0.917 20 H 0.090 0.910 21 H 0.140 0.860 22 H 0.158 0.842 23 H 0.143 0.857 24 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -6.478 -4.712 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.050 3.950 10 H 0.044 0.956 11 C -0.098 4.098 12 C -0.165 4.165 13 C -0.122 4.122 14 C -0.155 4.155 15 C -0.144 4.144 16 C -0.149 4.149 17 C -0.111 4.111 18 H 0.072 0.928 19 H 0.102 0.898 20 H 0.108 0.892 21 H 0.157 0.843 22 H 0.175 0.825 23 H 0.161 0.839 24 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.172 -6.365 -4.716 8.214 hybrid contribution -0.034 1.235 0.096 1.239 sum 2.138 -5.130 -4.620 7.227 Atomic orbital electron populations 1.70109 1.07503 1.27551 1.50219 1.25849 0.95700 1.02794 0.94106 0.85468 0.79188 0.79096 0.77722 1.18729 1.20798 1.20043 1.21280 0.92996 0.90815 1.51217 0.92023 1.19131 0.93395 0.93450 0.89028 0.95584 1.21919 0.99873 0.96764 0.91287 1.22679 0.99739 0.96435 0.97681 1.20599 1.00143 0.99339 0.92109 1.21215 0.97162 0.98250 0.98879 1.21231 1.00371 0.95231 0.97519 1.20535 1.00256 0.99860 0.94274 1.23373 0.93835 0.95568 0.98293 0.92806 0.89817 0.89173 0.84256 0.82461 0.83946 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.55 13.28 21.45 0.28 -54.26 14 2 C 0.02 0.87 5.46 84.65 0.46 1.33 14 3 Si 0.96 44.14 29.54 68.60 2.03 46.17 14 4 H -0.26 -11.62 7.11 99.48 0.71 -10.92 14 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 14 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 14 7 C -0.53 -29.82 8.76 25.60 0.22 -29.59 14 8 H 0.06 3.40 7.67 -2.91 -0.02 3.37 14 9 C 0.07 3.64 3.61 -11.83 -0.04 3.59 14 10 H 0.03 1.51 8.13 -2.39 -0.02 1.49 14 11 C -0.06 -2.64 7.85 30.30 0.24 -2.40 14 12 C -0.17 -7.12 7.49 -19.38 -0.15 -7.27 14 13 C -0.10 -3.65 10.03 22.27 0.22 -3.43 14 14 C -0.14 -4.41 10.04 22.24 0.22 -4.19 14 15 C -0.13 -4.61 10.04 22.24 0.22 -4.38 14 16 C -0.13 -6.15 10.03 22.27 0.22 -5.93 14 17 C -0.11 -5.56 6.98 -19.38 -0.14 -5.69 14 18 H 0.26 14.75 8.31 -92.71 -0.77 13.98 14 19 H 0.08 3.41 7.89 -2.39 -0.02 3.39 14 20 H 0.09 3.33 8.14 -2.38 -0.02 3.31 14 21 H 0.14 3.84 8.06 -2.91 -0.02 3.82 14 22 H 0.16 3.61 8.06 -2.91 -0.02 3.59 14 23 H 0.14 4.18 8.06 -2.91 -0.02 4.16 14 24 H 0.09 4.44 8.06 -2.91 -0.02 4.42 14 Total: -1.00 -64.02 216.79 4.98 -59.04 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.18 Total: 7.01 kcal Atomic # 6 Polarization: -59.45 SS G_CDS: 1.49 Total: -57.96 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.28 Total: -54.26 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.02 4.98 -59.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085574419.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.931 kcal (2) G-P(sol) polarization free energy of solvation -64.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds