Wall clock time and date at job start Mon Mar 30 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38329 * 120.16260 * 2 1 4 4 N 1.39684 * 119.95145 * 359.97438 * 3 2 1 5 5 C 1.39282 * 120.09457 * 180.25609 * 3 2 1 6 6 C 1.38526 * 120.42570 * 359.73964 * 5 3 2 7 7 C 1.37637 * 120.32436 * 0.02562 * 6 5 3 8 8 C 1.40567 * 120.16447 * 179.73993 * 2 1 3 9 9 C 1.41410 * 120.20425 * 0.02818 * 8 2 1 10 10 H 1.07996 * 119.99620 * 333.47287 * 9 8 2 11 11 C 1.39923 * 120.00111 * 153.47470 * 9 8 2 12 12 N 1.30835 * 119.99945 * 343.92723 * 11 9 8 13 13 Si 1.86799 * 120.00204 * 163.91648 * 11 9 8 14 14 H 1.48509 * 109.47014 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46869 * 120.00169 * 13 11 9 16 16 H 1.48493 * 109.47625 * 240.00588 * 13 11 9 17 17 H 1.09001 * 109.47203 * 270.26076 * 1 2 3 18 18 H 1.09004 * 109.46990 * 30.25490 * 1 2 3 19 19 H 1.08996 * 109.47183 * 150.26006 * 1 2 3 20 20 H 0.97001 * 120.00366 * 180.25804 * 4 3 2 21 21 H 0.96998 * 119.99991 * 0.26107 * 4 3 2 22 22 H 1.08004 * 119.78833 * 179.71706 * 5 3 2 23 23 H 1.07998 * 119.83614 * 179.97438 * 6 5 3 24 24 H 1.08000 * 120.05322 * 180.02562 * 7 6 5 25 25 H 0.97001 * 119.99953 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1960 0.0000 4 7 1.5060 2.4071 -0.0005 5 6 3.5948 1.1944 -0.0054 6 6 4.2949 -0.0010 -0.0053 7 6 3.6210 -1.2010 -0.0005 8 6 2.2133 -1.2153 0.0055 9 6 1.5141 -2.4445 0.0105 10 1 0.5196 -2.4982 0.4280 11 6 2.1109 -3.5910 -0.5255 12 7 3.1579 -3.4812 -1.3023 13 14 1.4129 -5.2783 -0.1317 14 1 0.2359 -5.1309 0.7619 15 1 0.9974 -5.9481 -1.3903 16 1 2.4498 -6.0972 0.5459 17 1 -0.3634 0.0047 1.0277 18 1 -0.3633 0.8877 -0.5178 19 1 -0.3633 -0.8923 -0.5098 20 1 1.9926 3.2462 -0.0043 21 1 0.5360 2.4090 0.0029 22 1 4.1325 2.1310 -0.0100 23 1 5.3749 0.0089 -0.0100 24 1 4.1712 -2.1304 -0.0001 25 1 3.5718 -4.2760 -1.6736 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090375594.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:24 Heat of formation + Delta-G solvation = -11.829970 kcal Electronic energy + Delta-G solvation = -10086.239743 eV Core-core repulsion = 8255.849416 eV Total energy + Delta-G solvation = -1830.390327 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.71590 -36.08637 -34.31605 -32.93706 -29.62663 -27.55674 -26.51187 -22.53129 -21.35085 -19.10509 -17.61951 -17.09606 -16.29045 -15.79266 -14.69890 -14.57787 -14.39732 -13.73044 -13.17758 -12.96053 -12.80052 -12.66003 -12.50729 -12.08833 -11.47331 -11.18915 -11.07427 -10.71723 -9.13802 -8.56581 -7.93035 -6.27550 1.05196 1.36019 1.40858 1.55317 1.60386 2.24702 2.83986 3.41548 3.84359 4.53516 4.61133 4.80179 5.01575 5.06714 5.20720 5.31483 5.36984 5.49800 5.77785 6.06582 6.12781 6.25052 6.38724 6.70252 6.94164 7.06865 7.25015 7.38620 8.41995 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.060697 B = 0.014707 C = 0.012239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.193574 B = 1903.400684 C = 2287.169869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.290 4.290 3 C 0.227 3.773 4 N -0.876 5.876 5 C -0.309 4.309 6 C -0.082 4.082 7 C -0.233 4.233 8 C 0.111 3.889 9 C -0.491 4.491 10 H 0.078 0.922 11 C 0.032 3.968 12 N -0.828 5.828 13 Si 0.980 3.020 14 H -0.257 1.257 15 H -0.267 1.267 16 H -0.267 1.267 17 H 0.045 0.955 18 H 0.058 0.942 19 H 0.046 0.954 20 H 0.398 0.602 21 H 0.397 0.603 22 H 0.111 0.889 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 3.445 1.636 4.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.297 4.297 3 C 0.124 3.876 4 N -0.419 5.419 5 C -0.332 4.332 6 C -0.101 4.101 7 C -0.254 4.254 8 C 0.108 3.892 9 C -0.521 4.521 10 H 0.096 0.904 11 C -0.182 4.182 12 N -0.454 5.454 13 Si 0.801 3.199 14 H -0.181 1.181 15 H -0.192 1.192 16 H -0.191 1.191 17 H 0.064 0.936 18 H 0.077 0.923 19 H 0.065 0.935 20 H 0.227 0.773 21 H 0.227 0.773 22 H 0.129 0.871 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.837 3.271 1.486 4.578 hybrid contribution -0.030 -0.507 -0.043 0.510 sum -2.867 2.764 1.443 4.235 Atomic orbital electron populations 1.20150 0.91726 1.00664 0.99858 1.19646 0.95865 0.91672 1.22468 1.17423 0.91141 0.86175 0.92904 1.42277 1.08610 1.04275 1.86706 1.20158 0.92149 0.97152 1.23778 1.20689 0.98161 0.92771 0.98475 1.21109 0.94903 0.96416 1.12935 1.17663 0.92148 0.92548 0.86832 1.19803 1.02524 0.93539 1.36228 0.90406 1.26784 0.94414 1.04946 0.92044 1.69940 1.19737 1.32767 1.22986 0.85192 0.79260 0.76310 0.79106 1.18054 1.19174 1.19149 0.93610 0.92322 0.93528 0.77333 0.77335 0.87056 0.87673 0.88834 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.79 8.95 71.23 0.64 -2.15 15 2 C -0.29 -14.42 5.96 -19.28 -0.11 -14.53 15 3 C 0.23 10.13 6.73 38.16 0.26 10.38 15 4 N -0.88 -29.02 8.98 -51.49 -0.46 -29.48 15 5 C -0.31 -14.04 9.90 22.59 0.22 -13.82 15 6 C -0.08 -4.05 10.01 22.20 0.22 -3.83 15 7 C -0.23 -12.99 8.68 22.75 0.20 -12.80 15 8 C 0.11 6.22 5.56 -21.31 -0.12 6.10 15 9 C -0.49 -27.09 8.11 23.46 0.19 -26.90 15 10 H 0.08 4.12 6.90 -2.91 -0.02 4.10 15 11 C 0.03 1.68 5.16 85.25 0.44 2.12 15 12 N -0.83 -45.06 10.97 21.82 0.24 -44.82 15 13 Si 0.98 39.31 29.59 68.60 2.03 41.34 15 14 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 15 H -0.27 -10.23 7.11 99.48 0.71 -9.52 15 16 H -0.27 -10.32 7.11 99.48 0.71 -9.62 15 17 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 18 H 0.06 2.04 6.56 -2.39 -0.02 2.02 15 19 H 0.05 2.03 6.79 -2.39 -0.02 2.01 15 20 H 0.40 10.87 8.84 -92.71 -0.82 10.05 15 21 H 0.40 11.60 6.81 -92.71 -0.63 10.96 15 22 H 0.11 4.35 8.06 -2.91 -0.02 4.32 15 23 H 0.11 4.60 8.06 -2.91 -0.02 4.58 15 24 H 0.09 5.47 6.22 -2.91 -0.02 5.45 15 25 H 0.28 13.98 8.30 -92.71 -0.77 13.21 15 Total: -1.00 -61.87 214.58 3.51 -58.37 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -0.24 Total: 30.01 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 1.93 Total: -55.42 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -0.22 Total: -74.30 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -61.87 3.51 -58.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090375594.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.536 kcal (2) G-P(sol) polarization free energy of solvation -61.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds