Wall clock time and date at job start Mon Mar 30 2020 01:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30556 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48502 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47025 * 299.99977 * 3 2 1 6 6 H 1.48497 * 109.47194 * 60.00255 * 3 2 1 7 7 C 1.40308 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99889 * 170.35142 * 7 2 1 9 9 C 1.41422 * 120.00248 * 350.34754 * 7 2 1 10 10 N 1.31300 * 119.99825 * 333.80433 * 9 7 2 11 11 C 1.48347 * 119.99931 * 153.79972 * 9 7 2 12 12 C 1.39379 * 120.12170 * 180.02562 * 11 9 7 13 13 C 1.38004 * 119.87010 * 179.97438 * 12 11 9 14 14 C 1.38335 * 120.12837 * 359.97438 * 13 12 11 15 15 C 1.38331 * 120.24920 * 0.02562 * 14 13 12 16 16 C 1.38012 * 120.12738 * 0.02562 * 15 14 13 17 17 H 0.97001 * 119.99664 * 359.97438 * 1 2 3 18 18 H 0.97005 * 120.00453 * 354.47609 * 10 9 7 19 19 H 1.07995 * 120.06583 * 359.69810 * 12 11 9 20 20 H 1.08006 * 119.93832 * 179.97438 * 13 12 11 21 21 H 1.08006 * 119.87514 * 180.02562 * 14 13 12 22 22 H 1.08001 * 119.94051 * 180.02562 * 15 14 13 23 23 H 1.07993 * 120.06383 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6995 1.3463 -0.0006 5 1 1.8808 2.3964 -1.2125 6 1 1.8808 2.3964 1.2125 7 6 2.0071 -1.2151 -0.0005 8 1 3.0756 -1.2217 -0.1573 9 6 1.3150 -2.4313 0.2043 10 7 0.1892 -2.4403 0.8800 11 6 1.8609 -3.6969 -0.3444 12 6 1.1806 -4.8968 -0.1446 13 6 1.6929 -6.0710 -0.6578 14 6 2.8788 -6.0585 -1.3698 15 6 3.5582 -4.8705 -1.5713 16 6 3.0559 -3.6903 -1.0618 17 1 -0.4850 0.8401 0.0004 18 1 -0.1268 -1.6285 1.3068 19 1 0.2568 -4.9084 0.4146 20 1 1.1669 -7.0016 -0.5032 21 1 3.2758 -6.9798 -1.7700 22 1 4.4834 -4.8664 -2.1283 23 1 3.5873 -2.7634 -1.2193 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100064965.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:52 Heat of formation + Delta-G solvation = 11.720753 kcal Electronic energy + Delta-G solvation = -9423.940958 eV Core-core repulsion = 7621.883345 eV Total energy + Delta-G solvation = -1802.057613 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 175.069 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.82855 -36.85012 -33.73316 -31.71991 -30.74753 -28.08359 -24.22495 -23.07461 -21.07320 -18.74249 -17.53230 -16.85636 -15.90829 -15.51517 -14.84406 -14.30624 -14.04099 -13.81377 -13.38678 -12.95707 -12.75700 -12.15886 -11.89073 -11.70462 -11.52264 -10.71557 -9.66515 -9.58079 -9.13187 -8.43762 -6.71130 0.40889 0.68973 1.32188 1.36426 1.52500 2.17848 2.25174 2.97861 3.63333 4.17893 4.25733 4.31862 4.46809 4.81603 4.85340 5.19815 5.28785 5.33419 5.68343 5.73515 5.83593 6.01069 6.28749 6.35326 6.77415 7.04341 8.33850 8.39151 Molecular weight = 175.07amu Principal moments of inertia in cm(-1) A = 0.071290 B = 0.012794 C = 0.011090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.667672 B = 2188.075772 C = 2524.298322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.025 3.975 3 Si 0.992 3.008 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.083 0.917 9 C 0.272 3.728 10 N -0.815 5.815 11 C -0.060 4.060 12 C -0.116 4.116 13 C -0.131 4.131 14 C -0.122 4.122 15 C -0.126 4.126 16 C -0.114 4.114 17 H 0.285 0.715 18 H 0.319 0.681 19 H 0.106 0.894 20 H 0.145 0.855 21 H 0.158 0.842 22 H 0.153 0.847 23 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -5.288 -3.481 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.189 4.189 3 Si 0.813 3.187 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.101 0.899 9 C 0.098 3.902 10 N -0.440 5.440 11 C -0.061 4.061 12 C -0.136 4.136 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.144 4.144 16 C -0.134 4.134 17 H 0.095 0.905 18 H 0.133 0.867 19 H 0.124 0.876 20 H 0.163 0.837 21 H 0.175 0.825 22 H 0.170 0.830 23 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.467 -5.964 -3.262 9.382 hybrid contribution 0.075 2.047 0.235 2.062 sum 6.542 -3.916 -3.027 8.204 Atomic orbital electron populations 1.69684 1.09195 1.30290 1.39123 1.26889 0.95608 1.04944 0.91420 0.85013 0.79433 0.75729 0.78560 1.17467 1.19221 1.19486 1.20619 0.96769 0.92011 1.48008 0.89937 1.19824 0.90388 0.90703 0.89290 1.69624 1.17940 1.36304 1.20181 1.19528 0.95545 0.92983 0.98091 1.21383 0.99710 0.92674 0.99817 1.21380 0.97306 0.97453 0.98743 1.21539 0.94900 0.98960 0.98634 1.21415 1.01013 0.91773 1.00198 1.21461 0.95039 0.99475 0.97383 0.90484 0.86664 0.87628 0.83745 0.82474 0.82961 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.41 11.13 21.88 0.24 -48.16 14 2 C 0.02 1.32 5.27 85.39 0.45 1.77 14 3 Si 0.99 40.20 29.57 68.60 2.03 42.23 14 4 H -0.25 -9.66 7.11 99.48 0.71 -8.95 14 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 14 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 14 7 C -0.53 -29.84 8.52 23.56 0.20 -29.64 14 8 H 0.08 4.28 6.59 -2.91 -0.02 4.26 14 9 C 0.27 15.72 6.65 42.70 0.28 16.00 14 10 N -0.81 -49.58 12.66 -48.00 -0.61 -50.19 14 11 C -0.06 -2.95 5.88 -20.04 -0.12 -3.07 14 12 C -0.12 -5.09 9.58 22.49 0.22 -4.87 14 13 C -0.13 -4.33 10.03 22.24 0.22 -4.10 14 14 C -0.12 -3.45 10.04 22.31 0.22 -3.23 14 15 C -0.13 -3.92 10.03 22.24 0.22 -3.70 14 16 C -0.11 -4.64 9.41 22.49 0.21 -4.43 14 17 H 0.28 14.70 8.29 -92.71 -0.77 13.93 14 18 H 0.32 19.99 6.59 -92.70 -0.61 19.38 14 19 H 0.11 4.97 7.55 -2.91 -0.02 4.95 14 20 H 0.14 3.74 8.06 -2.91 -0.02 3.72 14 21 H 0.16 3.04 8.06 -2.91 -0.02 3.01 14 22 H 0.15 3.50 8.06 -2.91 -0.02 3.48 14 23 H 0.12 4.94 6.47 -2.91 -0.02 4.92 14 Total: -1.00 -66.49 209.76 4.19 -62.30 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.61 Total: 29.09 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 1.91 Total: -35.27 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -0.36 Total: -98.35 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -66.49 4.19 -62.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100064965.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.023 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds