Wall clock time and date at job start Mon Mar 30 2020 02:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48502 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47125 * 299.99612 * 3 2 1 6 6 H 1.48505 * 109.47085 * 59.99595 * 3 2 1 7 7 C 1.40168 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.40239 * 119.99805 * 0.02562 * 7 2 1 10 10 N 1.37392 * 126.65979 * 359.94829 * 9 7 2 11 11 H 0.96996 * 126.19920 * 0.04027 * 10 9 7 12 12 N 1.40510 * 107.59285 * 180.02562 * 10 9 7 13 13 C 1.31654 * 109.12914 * 359.96382 * 12 10 9 14 14 C 1.38902 * 108.79100 * 0.03823 * 13 12 10 15 15 C 1.51246 * 109.72613 * 179.97438 * 14 13 12 16 16 C 1.54367 * 105.21338 * 17.20176 * 15 14 13 17 17 C 1.51479 * 141.60955 * 180.02562 * 13 12 10 18 18 H 0.96996 * 120.00081 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.31050 * 258.23941 * 15 14 13 20 20 H 1.09000 * 110.31222 * 136.16690 * 15 14 13 21 21 H 1.09004 * 110.80148 * 91.84694 * 16 15 14 22 22 H 1.09003 * 110.79801 * 215.14594 * 16 15 14 23 23 H 1.09008 * 110.29839 * 43.87894 * 17 13 12 24 24 H 1.08991 * 110.38504 * 281.77541 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.7016 1.3464 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8828 2.3965 1.2125 7 6 2.0085 -1.2139 0.0005 8 1 3.0885 -1.2138 0.0010 9 6 1.3073 -2.4284 0.0005 10 7 -0.0574 -2.5877 0.0010 11 1 -0.7171 -1.8767 0.0009 12 7 -0.3239 -3.9673 0.0014 13 6 0.8156 -4.6268 0.0004 14 6 1.8615 -3.7129 0.0002 15 6 3.1827 -4.4491 -0.0004 16 6 2.8438 -5.8892 -0.4410 17 6 1.3719 -6.0357 -0.0004 18 1 -0.4850 0.8400 -0.0004 19 1 3.6150 -4.4514 1.0003 20 1 3.8720 -3.9890 -0.7085 21 1 2.9368 -5.9953 -1.5218 22 1 3.4786 -6.6108 0.0733 23 1 0.8248 -6.6579 -0.7088 24 1 1.3181 -6.4657 0.9997 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107291144.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:10 Heat of formation + Delta-G solvation = 47.833019 kcal Electronic energy + Delta-G solvation = -10218.934275 eV Core-core repulsion = 8325.705219 eV Total energy + Delta-G solvation = -1893.229057 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.25394 -35.12030 -33.47197 -29.59427 -27.65997 -26.65567 -24.50352 -21.26759 -19.17669 -17.73798 -17.09820 -15.18294 -14.77367 -14.29691 -13.40031 -12.42041 -12.25478 -12.18302 -11.87956 -11.37321 -11.02359 -10.88501 -10.55108 -10.22747 -10.16351 -10.01662 -9.55051 -8.53999 -7.72371 -7.04550 -6.83237 -4.57234 2.84700 3.00070 3.07182 3.67027 3.81783 4.15396 4.70545 5.22137 5.48181 5.75242 5.87645 6.25121 6.29756 6.51571 6.61065 6.77880 7.01087 7.04355 7.15891 7.46160 7.71797 7.95378 8.35020 8.57052 8.69061 9.50010 9.75436 10.04568 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.071016 B = 0.013556 C = 0.011535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.182915 B = 2064.986167 C = 2426.880002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.069 3.931 3 Si 0.934 3.066 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.440 4.440 8 H 0.095 0.905 9 C 0.289 3.711 10 N -0.489 5.489 11 H 0.441 0.559 12 N -0.375 5.375 13 C 0.046 3.954 14 C -0.403 4.403 15 C -0.010 4.010 16 C -0.116 4.116 17 C -0.022 4.022 18 H 0.290 0.710 19 H 0.042 0.958 20 H 0.043 0.957 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 -2.042 -0.176 4.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.146 4.146 3 Si 0.759 3.241 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.113 0.887 9 C 0.164 3.836 10 N -0.209 5.209 11 H 0.295 0.705 12 N -0.200 5.200 13 C -0.117 4.117 14 C -0.416 4.416 15 C -0.048 4.048 16 C -0.154 4.154 17 C -0.061 4.061 18 H 0.101 0.899 19 H 0.060 0.940 20 H 0.062 0.938 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.759 -2.050 -0.174 3.442 hybrid contribution 0.756 1.339 0.012 1.538 sum 3.516 -0.711 -0.161 3.591 Atomic orbital electron populations 1.68791 1.07937 1.30219 1.40220 1.26075 0.94850 1.02218 0.91456 0.85814 0.80475 0.79333 0.78508 1.18201 1.19785 1.19789 1.19034 0.95158 0.88123 1.45405 0.88733 1.17895 0.83214 0.92361 0.90163 1.47422 1.06015 1.04094 1.63358 0.70547 1.76762 1.20880 0.88650 1.33659 1.22396 0.92567 0.96106 1.00600 1.20482 0.95066 0.91916 1.34176 1.19819 0.94369 0.92176 0.98450 1.22286 0.95224 0.97576 1.00293 1.20252 0.94588 0.90808 1.00481 0.89898 0.93975 0.93789 0.91994 0.91896 0.92236 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.19 10.74 55.56 0.60 -20.59 14 2 C 0.07 1.70 5.50 -17.28 -0.10 1.61 14 3 Si 0.93 18.49 29.56 -169.99 -5.03 13.46 14 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 14 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 7 C -0.44 -11.82 9.36 -38.11 -0.36 -12.17 14 8 H 0.09 2.41 7.85 -52.49 -0.41 2.00 14 9 C 0.29 8.20 6.78 -84.00 -0.57 7.63 14 10 N -0.49 -13.89 7.11 32.43 0.23 -13.66 14 11 H 0.44 12.20 6.36 -182.29 -1.16 11.05 14 12 N -0.37 -10.44 12.69 33.80 0.43 -10.01 14 13 C 0.05 1.18 8.05 -82.04 -0.66 0.52 14 14 C -0.40 -10.59 6.91 -103.49 -0.72 -11.31 14 15 C -0.01 -0.21 6.76 -26.90 -0.18 -0.39 14 16 C -0.12 -2.02 7.07 -25.31 -0.18 -2.20 14 17 C -0.02 -0.42 6.77 -26.80 -0.18 -0.61 14 18 H 0.29 6.57 8.29 -40.82 -0.34 6.23 14 19 H 0.04 0.85 8.14 -51.93 -0.42 0.42 14 20 H 0.04 0.89 8.14 -51.93 -0.42 0.47 14 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 14 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 14 23 H 0.06 1.05 8.14 -51.92 -0.42 0.63 14 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 14 LS Contribution 209.98 15.07 3.16 3.16 Total: -1.00 -29.55 209.98 -6.78 -36.33 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -3.24 Total: 8.22 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -2.94 Total: -16.92 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 1.26 Total: -44.26 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -29.55 -6.78 -36.33 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107291144.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.166 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds