Wall clock time and date at job start Mon Mar 30 2020 02:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48502 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47125 * 299.99612 * 3 2 1 6 6 H 1.48505 * 109.47085 * 59.99595 * 3 2 1 7 7 C 1.40168 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.40239 * 119.99805 * 0.02562 * 7 2 1 10 10 N 1.37392 * 126.65979 * 359.94829 * 9 7 2 11 11 H 0.96996 * 126.19920 * 0.04027 * 10 9 7 12 12 N 1.40510 * 107.59285 * 180.02562 * 10 9 7 13 13 C 1.31654 * 109.12914 * 359.96382 * 12 10 9 14 14 C 1.38902 * 108.79100 * 0.03823 * 13 12 10 15 15 C 1.51246 * 109.72613 * 179.97438 * 14 13 12 16 16 C 1.54367 * 105.21338 * 17.20176 * 15 14 13 17 17 C 1.51479 * 141.60955 * 180.02562 * 13 12 10 18 18 H 0.96996 * 120.00081 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.31050 * 258.23941 * 15 14 13 20 20 H 1.09000 * 110.31222 * 136.16690 * 15 14 13 21 21 H 1.09004 * 110.80148 * 91.84694 * 16 15 14 22 22 H 1.09003 * 110.79801 * 215.14594 * 16 15 14 23 23 H 1.09008 * 110.29839 * 43.87894 * 17 13 12 24 24 H 1.08991 * 110.38504 * 281.77541 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.7016 1.3464 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8828 2.3965 1.2125 7 6 2.0085 -1.2139 0.0005 8 1 3.0885 -1.2138 0.0010 9 6 1.3073 -2.4284 0.0005 10 7 -0.0574 -2.5877 0.0010 11 1 -0.7171 -1.8767 0.0009 12 7 -0.3239 -3.9673 0.0014 13 6 0.8156 -4.6268 0.0004 14 6 1.8615 -3.7129 0.0002 15 6 3.1827 -4.4491 -0.0004 16 6 2.8438 -5.8892 -0.4410 17 6 1.3719 -6.0357 -0.0004 18 1 -0.4850 0.8400 -0.0004 19 1 3.6150 -4.4514 1.0003 20 1 3.8720 -3.9890 -0.7085 21 1 2.9368 -5.9953 -1.5218 22 1 3.4786 -6.6108 0.0733 23 1 0.8248 -6.6579 -0.7088 24 1 1.3181 -6.4657 0.9997 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107291144.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:10 Heat of formation + Delta-G solvation = 28.600191 kcal Electronic energy + Delta-G solvation = -10219.768273 eV Core-core repulsion = 8325.705219 eV Total energy + Delta-G solvation = -1894.063055 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18062 -36.85559 -35.37294 -31.56082 -29.56559 -28.38589 -26.39284 -23.00191 -21.01411 -19.65893 -19.02496 -17.07844 -16.42201 -16.05873 -15.10304 -14.31926 -14.06256 -13.93293 -13.46268 -12.99270 -12.86773 -12.53951 -12.28006 -11.78481 -11.75975 -11.62879 -11.35022 -10.53874 -9.75664 -8.92681 -8.83923 -6.59754 1.19191 1.37743 1.56078 1.78292 2.14981 2.24983 2.76686 3.22234 3.80281 4.26655 4.38266 4.63565 4.89818 5.00131 5.09985 5.11119 5.18545 5.46553 5.52636 5.59082 5.76090 6.00692 6.37468 6.63713 6.70631 7.44150 7.70610 8.17690 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.071016 B = 0.013556 C = 0.011535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.182915 B = 2064.986167 C = 2426.880002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.028 3.972 3 Si 1.015 2.985 4 H -0.252 1.252 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.472 4.472 8 H 0.099 0.901 9 C 0.250 3.750 10 N -0.508 5.508 11 H 0.435 0.565 12 N -0.412 5.412 13 C 0.035 3.965 14 C -0.434 4.434 15 C -0.013 4.013 16 C -0.100 4.100 17 C -0.022 4.022 18 H 0.301 0.699 19 H 0.050 0.950 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.106 0.894 23 H 0.079 0.921 24 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.808 -2.244 -0.205 6.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.184 4.184 3 Si 0.834 3.166 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.509 4.509 8 H 0.117 0.883 9 C 0.125 3.875 10 N -0.227 5.227 11 H 0.288 0.712 12 N -0.237 5.237 13 C -0.128 4.128 14 C -0.447 4.447 15 C -0.051 4.051 16 C -0.138 4.138 17 C -0.061 4.061 18 H 0.113 0.887 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.090 0.910 22 H 0.125 0.875 23 H 0.097 0.903 24 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.306 -2.286 -0.203 4.880 hybrid contribution 0.224 1.409 0.031 1.427 sum 4.530 -0.877 -0.173 4.617 Atomic orbital electron populations 1.68823 1.09422 1.31896 1.39178 1.27134 0.95679 1.05687 0.89944 0.84649 0.79043 0.73977 0.78966 1.17554 1.18789 1.18802 1.19352 0.95567 0.88936 1.47005 0.88335 1.18589 0.83595 0.94194 0.91082 1.47504 1.06164 1.04393 1.64676 0.71205 1.76663 1.22630 0.88710 1.35743 1.23507 0.91644 0.99148 0.98461 1.21293 0.97963 0.91572 1.33832 1.19982 0.91970 0.93955 0.99205 1.22303 0.94213 0.95852 1.01449 1.20535 0.95669 0.87462 1.02424 0.88723 0.93183 0.93575 0.90990 0.87539 0.90279 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.05 10.74 21.87 0.23 -43.82 14 2 C 0.03 1.38 5.50 85.32 0.47 1.85 14 3 Si 1.01 37.15 29.56 68.60 2.03 39.18 14 4 H -0.25 -8.92 7.11 99.48 0.71 -8.21 14 5 H -0.26 -9.21 7.11 99.48 0.71 -8.50 14 6 H -0.26 -9.22 7.11 99.48 0.71 -8.51 14 7 C -0.47 -25.82 9.36 23.23 0.22 -25.60 14 8 H 0.10 5.10 7.85 -2.91 -0.02 5.08 14 9 C 0.25 14.58 6.78 39.16 0.27 14.85 14 10 N -0.51 -29.93 7.11 -51.31 -0.37 -30.29 14 11 H 0.43 25.22 6.36 -213.06 -1.35 23.86 14 12 N -0.41 -23.55 12.69 -46.96 -0.60 -24.15 14 13 C 0.03 1.78 8.05 42.99 0.35 2.12 14 14 C -0.43 -22.93 6.91 -19.13 -0.13 -23.06 14 15 C -0.01 -0.52 6.76 30.49 0.21 -0.31 14 16 C -0.10 -3.13 7.07 31.51 0.22 -2.90 14 17 C -0.02 -0.79 6.77 30.55 0.21 -0.58 14 18 H 0.30 13.65 8.29 -92.71 -0.77 12.88 14 19 H 0.05 1.91 8.14 -2.39 -0.02 1.89 14 20 H 0.05 1.80 8.14 -2.39 -0.02 1.79 14 21 H 0.07 2.10 8.14 -2.38 -0.02 2.08 14 22 H 0.11 2.44 8.14 -2.39 -0.02 2.42 14 23 H 0.08 2.56 8.14 -2.38 -0.02 2.54 14 24 H 0.09 2.84 8.14 -2.39 -0.02 2.82 14 Total: -1.00 -65.53 209.98 2.96 -62.57 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.14 Total: 30.14 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 1.80 Total: -33.63 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -0.73 Total: -98.26 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -65.53 2.96 -62.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107291144.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.165 kcal (2) G-P(sol) polarization free energy of solvation -65.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds